Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- peroxisome 1
- mitochondrion 1
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY06260 | Canola | plastid | 85.0 | 84.35 |
Bra031575.1-P | Field mustard | plastid | 85.0 | 84.35 |
CDY09917 | Canola | cytosol | 84.62 | 83.97 |
AT2G29310.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 73.08 | 72.52 |
AT2G29330.1 | Thale cress | cytosol, peroxisome, plastid | 70.0 | 70.0 |
AT2G30670.1 | Thale cress | cytosol, nucleus, peroxisome | 68.46 | 67.94 |
AT2G29320.1 | Thale cress | mitochondrion | 69.23 | 66.91 |
VIT_06s0004g05400.t01 | Wine grape | cytosol | 28.46 | 66.67 |
VIT_06s0004g05310.t01 | Wine grape | cytosol | 28.46 | 65.49 |
AT2G29360.1 | Thale cress | cytosol | 68.08 | 65.31 |
AT2G29290.2 | Thale cress | plastid | 65.77 | 65.27 |
AT1G07440.1 | Thale cress | mitochondrion | 66.54 | 65.04 |
AT2G29350.1 | Thale cress | plastid | 66.54 | 64.31 |
AT2G29150.1 | Thale cress | peroxisome | 66.15 | 64.18 |
VIT_06s0004g05320.t01 | Wine grape | endoplasmic reticulum, peroxisome, plastid | 61.92 | 63.89 |
VIT_06s0004g05370.t01 | Wine grape | peroxisome | 61.92 | 63.89 |
AT2G29370.1 | Thale cress | peroxisome | 65.77 | 63.81 |
VIT_06s0004g05440.t01 | Wine grape | cytosol | 20.0 | 63.41 |
Solyc03g096650.1.1 | Tomato | cytosol | 21.54 | 62.92 |
VIT_06s0004g05380.t01 | Wine grape | plastid | 65.0 | 62.59 |
AT5G06060.1 | Thale cress | peroxisome | 63.46 | 62.5 |
AT2G29300.2 | Thale cress | extracellular | 68.08 | 61.89 |
VIT_06s0004g05430.t01 | Wine grape | mitochondrion, nucleus, peroxisome | 64.23 | 61.85 |
KRH24731 | Soybean | nucleus | 61.92 | 60.3 |
VIT_06s0004g05330.t01 | Wine grape | peroxisome | 58.46 | 59.84 |
AT2G29170.1 | Thale cress | cytosol | 24.23 | 58.88 |
KRH24733 | Soybean | nucleus | 59.62 | 58.49 |
AT2G29340.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 68.08 | 57.65 |
KRH24732 | Soybean | cytosol, endoplasmic reticulum, plastid | 59.62 | 57.62 |
VIT_06s0004g05360.t01 | Wine grape | cytosol, mitochondrion, plastid | 53.08 | 57.5 |
VIT_06s0004g05390.t01 | Wine grape | cytosol, plasma membrane, plastid | 50.77 | 53.66 |
KRH29740 | Soybean | cytosol | 19.62 | 52.04 |
VIT_06s0004g05450.t01 | Wine grape | plasma membrane | 35.77 | 51.67 |
GSMUA_Achr5P04570_001 | Banana | cytosol | 23.08 | 47.24 |
AT2G29260.1 | Thale cress | plastid | 58.46 | 47.2 |
AT4G05530.1 | Thale cress | peroxisome | 29.62 | 30.32 |
AT3G05260.1 | Thale cress | cytosol | 26.54 | 23.88 |
AT2G07640.1 | Thale cress | mitochondrion | 13.46 | 22.44 |
AT3G12800.1 | Thale cress | peroxisome | 24.62 | 21.48 |
AT1G54870.2 | Thale cress | plastid | 27.31 | 21.07 |
AT1G36580.1 | Thale cress | nucleus | 14.62 | 19.49 |
Protein Annotations
Gene3D:3.40.50.720 | MapMan:50.1.1 | EntrezGene:837257 | ProteinID:AAF79553.1 | ProteinID:AEE28127.1 | ArrayExpress:AT1G07450 |
EnsemblPlantsGene:AT1G07450 | RefSeq:AT1G07450 | TAIR:AT1G07450 | RefSeq:AT1G07450-TAIR-G | EnsemblPlants:AT1G07450.1 | TAIR:AT1G07450.1 |
EMBL:AY090925 | Unigene:At.42300 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0016491 | GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf | RefSeq:NP_172225.1 | PFAM:PF13561 | PO:PO:0000013 |
PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 |
PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
PRINTS:PR00080 | PRINTS:PR00081 | ScanProsite:PS00061 | PANTHER:PTHR42898 | PANTHER:PTHR42898:SF7 | UniProt:Q8RX32 |
InterPro:SDR_fam | SUPFAM:SSF51735 | InterPro:Sc_DH/Rdtase_CS | UniParc:UPI00000481F1 | SEG:seg | : |
Description
Tropinone reductase homolog At1g07450 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX32]
Coordinates
chr1:-:2287926..2289336
Molecular Weight (calculated)
27897.4 Da
IEP (calculated)
5.036
GRAVY (calculated)
0.212
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MDINRWSLQG MTALVTGGSK GIGYAIVEEL VGFGARVHIC DIDETLLNEC LSGWHAKGFE VSGSICDVSS RPQRVQLMQT VSSLFGAKLN ILINNVGKYI
101: LKPTLESTAE DFSSLMATNL ESAYYISQLA HPLLKASGNG NIVFISSVTG VVSGTSTIYG VTKGALNQLA RDLACEWASD NIRANSVAPW VTATSLVQKY
201: LEDEIFAEAM FSRTPLGRAC EPREVASLVT FLCLPAASYI TGQTICIDGG FTVNGFSYKP
101: LKPTLESTAE DFSSLMATNL ESAYYISQLA HPLLKASGNG NIVFISSVTG VVSGTSTIYG VTKGALNQLA RDLACEWASD NIRANSVAPW VTATSLVQKY
201: LEDEIFAEAM FSRTPLGRAC EPREVASLVT FLCLPAASYI TGQTICIDGG FTVNGFSYKP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.