Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- peroxisome 1
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G29170.1 | Thale cress | cytosol | 11.28 | 20.56 |
| AT5G06060.1 | Thale cress | peroxisome | 23.08 | 17.05 |
| AT2G29290.2 | Thale cress | plastid | 22.56 | 16.79 |
| AT2G29150.1 | Thale cress | peroxisome | 23.08 | 16.79 |
| VIT_06s0004g05280.t01 | Wine grape | cytosol, nucleus, peroxisome | 21.54 | 16.67 |
| AT2G29370.1 | Thale cress | peroxisome | 22.56 | 16.42 |
| AT2G29360.1 | Thale cress | cytosol | 22.05 | 15.87 |
| KRH24734 | Soybean | extracellular, plasma membrane, vacuole | 9.23 | 15.79 |
| AT2G29350.1 | Thale cress | plastid | 21.54 | 15.61 |
| AT2G29310.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 20.51 | 15.27 |
| AT2G29330.1 | Thale cress | cytosol, peroxisome, plastid | 20.0 | 15.0 |
| AT1G07450.1 | Thale cress | cytosol, nucleus, peroxisome | 19.49 | 14.62 |
| AT1G07440.1 | Thale cress | mitochondrion | 19.49 | 14.29 |
| AT2G29320.1 | Thale cress | mitochondrion | 19.49 | 14.13 |
| AT2G30670.1 | Thale cress | cytosol, nucleus, peroxisome | 18.46 | 13.74 |
| KRH29741 | Soybean | plastid | 21.03 | 13.36 |
| Solyc06g005720.2.1 | Tomato | plastid | 20.51 | 13.29 |
| AT2G29300.2 | Thale cress | extracellular | 18.97 | 12.94 |
| AT2G29260.1 | Thale cress | plastid | 20.0 | 12.11 |
| AT2G29340.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 18.97 | 12.05 |
| AT4G05530.1 | Thale cress | peroxisome | 15.38 | 11.81 |
| AT3G05260.1 | Thale cress | cytosol | 16.92 | 11.42 |
| AT3G12800.1 | Thale cress | peroxisome | 15.9 | 10.4 |
| AT1G54870.2 | Thale cress | plastid | 16.41 | 9.5 |
| AT2G07640.1 | Thale cress | mitochondrion | 5.64 | 7.05 |
Protein Annotations
| ArrayExpress:AT1G36580 | EnsemblPlants:AT1G36580.1 | EnsemblPlantsGene:AT1G36580 | EntrezGene:840566 | GO:GO:0005575 | PANTHER:PTHR43296 |
| PANTHER:PTHR43296:SF1 | ProteinID:AEE31867.2 | RefSeq:AT1G36580 | RefSeq:AT1G36580-TAIR-G | RefSeq:NP_174871.5 | SEG:seg |
| TAIR:AT1G36580 | TAIR:AT1G36580.1 | Unigene:At.51978 | UniParc:UPI000848673A | UniProt:F4I386 | MapMan:35.1 |
Description
BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase-reductase B (TAIR:AT3G12800.1); Has 109 Blast hits to 109 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 2 /.../ce: NCBI BLink). [Source:TAIR;Acc:AT1G36580]
Coordinates
chr1:-:13816459..13818556
Molecular Weight (calculated)
22108.2 Da
IEP (calculated)
10.316
GRAVY (calculated)
-0.377
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLYKLGEKW DIAMAALYLS CDSGKYVSGL TLVVDAELCL SKPRHLAKEA VKQLSRAVAK KSRAKRMIIT MFWCILYKEC SIKTKNVFGA LPEEKYKSLD
101: SKSADDALEK EDKLRSAFDR VQALDETMVN QKGILAYIEK KKKKKRMATS ACVPTMSITW VKSPSNPRRR RGSMLAKDDG NSTVWFVVYP VEKRA
101: SKSADDALEK EDKLRSAFDR VQALDETMVN QKGILAYIEK KKKKKRMATS ACVPTMSITW VKSPSNPRRR RGSMLAKDDG NSTVWFVVYP VEKRA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.