Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- cytosol 2
- peroxisome 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G07640.1 | Thale cress | mitochondrion | 47.99 | 91.67 |
| CDX73802 | Canola | peroxisome | 89.93 | 89.93 |
| Bra001471.1-P | Field mustard | peroxisome | 89.6 | 89.6 |
| CDY00799 | Canola | peroxisome | 88.93 | 88.93 |
| Bra034728.1-P | Field mustard | cytosol | 87.58 | 88.78 |
| CDY08402 | Canola | cytosol | 87.58 | 88.78 |
| VIT_19s0085g00500.t01 | Wine grape | peroxisome | 81.88 | 82.15 |
| KRH13054 | Soybean | nucleus | 80.54 | 80.54 |
| KRH44885 | Soybean | nucleus | 78.52 | 78.52 |
| PGSC0003DMT400056868 | Potato | cytosol, peroxisome, plastid | 44.63 | 77.78 |
| Solyc07g066630.2.1 | Tomato | plastid | 77.85 | 77.59 |
| GSMUA_Achr3P23590_001 | Banana | peroxisome | 76.17 | 76.43 |
| VIT_01s0011g01520.t01 | Wine grape | peroxisome | 75.17 | 75.42 |
| GSMUA_Achr2P01480_001 | Banana | peroxisome | 74.5 | 74.75 |
| Os04t0614000-01 | Rice | cytosol | 73.49 | 73.24 |
| EES11417 | Sorghum | peroxisome | 71.81 | 72.05 |
| EES11416 | Sorghum | mitochondrion, peroxisome, plastid | 71.81 | 72.05 |
| Zm00001d026290_P001 | Maize | peroxisome | 71.48 | 71.48 |
| TraesCS2B01G441000.1 | Wheat | peroxisome | 70.47 | 70.23 |
| Zm00001d002332_P026 | Maize | peroxisome | 69.8 | 70.03 |
| TraesCS2D01G418900.1 | Wheat | peroxisome | 70.13 | 69.9 |
| TraesCS2A01G422500.1 | Wheat | golgi, peroxisome | 70.13 | 69.9 |
| HORVU2Hr1G098920.1 | Barley | peroxisome | 70.13 | 69.9 |
| AT4G05530.1 | Thale cress | peroxisome | 24.83 | 29.13 |
| AT3G05260.1 | Thale cress | cytosol | 27.18 | 28.03 |
| AT2G29310.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 23.83 | 27.1 |
| AT2G29290.2 | Thale cress | plastid | 23.83 | 27.1 |
| AT1G07440.1 | Thale cress | mitochondrion | 24.16 | 27.07 |
| AT2G29360.1 | Thale cress | cytosol | 24.5 | 26.94 |
| AT5G06060.1 | Thale cress | peroxisome | 23.83 | 26.89 |
| AT2G29330.1 | Thale cress | cytosol, peroxisome, plastid | 23.15 | 26.54 |
| AT2G29350.1 | Thale cress | plastid | 23.83 | 26.39 |
| AT2G30670.1 | Thale cress | cytosol, nucleus, peroxisome | 22.82 | 25.95 |
| AT2G29320.1 | Thale cress | mitochondrion | 23.15 | 25.65 |
| AT2G29150.1 | Thale cress | peroxisome | 22.82 | 25.37 |
| AT1G07450.1 | Thale cress | cytosol, nucleus, peroxisome | 21.48 | 24.62 |
| AT2G29170.1 | Thale cress | cytosol | 8.72 | 24.3 |
| AT1G54870.2 | Thale cress | plastid | 27.18 | 24.04 |
| AT2G29370.1 | Thale cress | peroxisome | 21.48 | 23.88 |
| AT2G29260.1 | Thale cress | plastid | 24.5 | 22.67 |
| AT2G29340.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 23.15 | 22.48 |
| AT2G29300.2 | Thale cress | extracellular | 21.48 | 22.38 |
| AT1G36580.1 | Thale cress | nucleus | 10.4 | 15.9 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:5.7.3.5.3 | EntrezGene:820462 | ProteinID:AEE75247.1 | EMBL:AK175259 | EMBL:AK175900 |
| EMBL:AK176181 | EMBL:AK176305 | EMBL:AK176508 | EMBL:AK176631 | EMBL:AK176776 | EMBL:AK176892 |
| EMBL:AK176909 | EMBL:AK221326 | EMBL:AK229784 | ArrayExpress:AT3G12800 | EnsemblPlantsGene:AT3G12800 | RefSeq:AT3G12800 |
| TAIR:AT3G12800 | RefSeq:AT3G12800-TAIR-G | EnsemblPlants:AT3G12800.1 | TAIR:AT3G12800.1 | EMBL:AY072396 | EMBL:AY114700 |
| ProteinID:BAB02424.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005777 | GO:GO:0006629 | GO:GO:0006631 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008670 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016491 |
| GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf | RefSeq:NP_187886.2 | PFAM:PF13561 | PO:PO:0000005 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PRINTS:PR00080 | PRINTS:PR00081 | PANTHER:PTHR43296 | PANTHER:PTHR43296:SF1 | UniProt:Q0WMN4 | UniProt:Q9LTV6 |
| Symbol:SDRB | InterPro:SDR_fam | SUPFAM:SSF51735 | UniParc:UPI000009DAAB | SEG:seg | : |
Description
SDRBUncharacterized protein At3g12790 [Source:UniProtKB/TrEMBL;Acc:Q0WMN4]
Coordinates
chr3:-:4063320..4064859
Molecular Weight (calculated)
31798.3 Da
IEP (calculated)
9.617
GRAVY (calculated)
-0.112
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSPFKPDVV RGQVALITGG GSGIGFEISS QFGKHGASIA IMGRRKQVLD DAVSALRSLG IQAIGLEGDV RKQEDARRVV EATFQHFGKL DILVNAAAGN
101: FLAAAEDLSP NGFRTVLDID AVGTFNMCHA ALKYLKKGAP GRDSSSGGGS IINISATLHY TASWYQIHVS AAKAAVDATT RNLALEWGTD YDIRVNGIAP
201: GPIGGTPGMS KLVPEEIENK TREYMPLYKV GEKWDIAMAA LYLSCDSGKY VSGLTMVVDG GLWLSKPRHL PKEAVKQLSR AVEKRSRAKP VGLPTSKL
101: FLAAAEDLSP NGFRTVLDID AVGTFNMCHA ALKYLKKGAP GRDSSSGGGS IINISATLHY TASWYQIHVS AAKAAVDATT RNLALEWGTD YDIRVNGIAP
201: GPIGGTPGMS KLVPEEIENK TREYMPLYKV GEKWDIAMAA LYLSCDSGKY VSGLTMVVDG GLWLSKPRHL PKEAVKQLSR AVEKRSRAKP VGLPTSKL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.