CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid

Predictor Summary:

plastid 2
peroxisome 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026290_P001	Maize	peroxisome	97.98	97.65
Os04t0614000-01	Rice	cytosol	91.25	90.64
HORVU2Hr1G098920.1	Barley	peroxisome	89.9	89.3
TraesCS2B01G441000.1	Wheat	peroxisome	89.56	88.96
TraesCS2D01G418900.1	Wheat	peroxisome	88.89	88.29
TraesCS2A01G422500.1	Wheat	golgi, peroxisome	88.89	88.29
EES11417	Sorghum	peroxisome	88.22	88.22
GSMUA_Achr2P01480_001	Banana	peroxisome	78.79	78.79
GSMUA_Achr3P23590_001	Banana	peroxisome	78.45	78.45
VIT_17s0000g08740.t01	Wine grape	cytosol	32.32	78.05
PGSC0003DMT400056868	Potato	cytosol, peroxisome, plastid	43.1	74.85
KRH13054	Soybean	nucleus	72.73	72.48
Solyc07g066630.2.1	Tomato	plastid	72.73	72.24
AT3G12800.1	Thale cress	peroxisome	72.05	71.81
KRH44885	Soybean	nucleus	71.72	71.48
CDX73802	Canola	peroxisome	71.04	70.81
Bra034728.1-P	Field mustard	cytosol	70.03	70.75
CDY08402	Canola	cytosol	70.03	70.75
CDY00799	Canola	peroxisome	70.71	70.47
Bra001471.1-P	Field mustard	peroxisome	70.37	70.13
KXG29040	Sorghum	cytosol, peroxisome, plastid	26.26	32.23
EER98384	Sorghum	peroxisome	26.26	30.83
EES19901	Sorghum	peroxisome	25.59	30.04
EES10195	Sorghum	mitochondrion	25.93	29.17
KXG29038	Sorghum	mitochondrion, plastid	25.59	28.79
EES10199	Sorghum	mitochondrion	24.58	27.44
EES10198	Sorghum	mitochondrion, plastid	24.92	27.31
KXG34055	Sorghum	plastid	24.92	26.71
OQU84126	Sorghum	peroxisome	24.92	26.06
EES08074	Sorghum	plastid	25.25	24.92
OQU92858	Sorghum	cytosol, peroxisome, plastid	25.59	24.68
OQU77380	Sorghum	mitochondrion	25.59	23.24
OQU91956	Sorghum	extracellular, peroxisome	21.55	20.0

Protein Annotations

EnsemblPlants:EES11416	EnsemblPlantsGene:SORBI_3006G213700	EntrezGene:8063963	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR43296	PANTHER:PTHR43296:SF1	PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081	ProteinID:EES11416
ProteinID:EES11416.1	RefSeq:XP_002447088.1	SUPFAM:SSF51735	unigene:Sbi.7544	UniParc:UPI0001A86F31	UniProt:C5YG01
MapMan:5.7.3.5.3	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:56222081..56225803

Molecular Weight (calculated)

31714.5 Da

IEP (calculated)

9.937

GRAVY (calculated)

-0.113

Length

297 amino acids

Sequence
(BLAST)

001: MESPFRADLL RGKAALVTGG GSGIGFEIAT QLARHGAHVA LMGRRREVLD KAVAALRSEG LKAVGFDGDV RKQEDAARVI AATVEHFGKL DILVNGAAGN
101: FLASPEDLKP KGFRTVLDID TLGTYTMCYE ALKYLKKGGP GRDPSSGGLI INISATLQYT AAWYQIHVSA AKAGVDSITR SLALEWGTDY DIRVNGIAPG
201: PIQDTPGMRK LAPEEMGKGK RETMPLFKLG EKWDIAMAAL YLASDAGKYV NGATIIVDGG LWLSRPRHIP KEEVKALSKV VEKKVRASGV GVPSSKL

Best Arabidopsis Sequence Match ( AT3G12800.1 )
(BLAST)

001: MDSPFKPDVV RGQVALITGG GSGIGFEISS QFGKHGASIA IMGRRKQVLD DAVSALRSLG IQAIGLEGDV RKQEDARRVV EATFQHFGKL DILVNAAAGN
101: FLAAAEDLSP NGFRTVLDID AVGTFNMCHA ALKYLKKGAP GRDSSSGGGS IINISATLHY TASWYQIHVS AAKAAVDATT RNLALEWGTD YDIRVNGIAP
201: GPIGGTPGMS KLVPEEIENK TREYMPLYKV GEKWDIAMAA LYLSCDSGKY VSGLTMVVDG GLWLSKPRHL PKEAVKQLSR AVEKRSRAKP VGLPTSKL

Arabidopsis Description

SDRBUncharacterized protein At3g12790 [Source:UniProtKB/TrEMBL;Acc:Q0WMN4]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.