CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
cytosol 2
peroxisome 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G134700.1	Wheat	peroxisome	68.66	70.65
TraesCS4A01G179900.1	Wheat	peroxisome	68.66	70.65
TraesCS4B01G140000.1	Wheat	peroxisome	67.61	69.57
EES10199	Sorghum	mitochondrion	59.51	63.53
KXG34055	Sorghum	plastid	59.86	61.37
EES10195	Sorghum	mitochondrion	53.17	57.2
KXG29038	Sorghum	mitochondrion, plastid	53.17	57.2
EES10198	Sorghum	mitochondrion, plastid	53.87	56.46
KXG29040	Sorghum	cytosol, peroxisome, plastid	47.89	56.2
GSMUA_Achr9P03470_001	Banana	cytosol	50.7	53.53
GSMUA_Achr11P...	Banana	cytosol	47.18	50.0
GSMUA_Achr9P03440_001	Banana	cytosol	46.13	48.34
GSMUA_Achr9P03430_001	Banana	cytosol, mitochondrion, plastid	43.66	47.33
GSMUA_Achr9P03420_001	Banana	mitochondrion	48.94	46.18
EES08074	Sorghum	plastid	46.48	43.85
CDY35991	Canola	plastid	18.66	42.74
GSMUA_Achr5P04560_001	Banana	cytosol	49.3	40.58
OQU92858	Sorghum	cytosol, peroxisome, plastid	43.31	39.94
Bra029705.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	22.18	38.65
EER98384	Sorghum	peroxisome	31.34	35.18
GSMUA_Achr6P34030_001	Banana	cytosol	44.37	34.81
EES19901	Sorghum	peroxisome	30.99	34.78
OQU91956	Sorghum	extracellular, peroxisome	35.56	31.56
GSMUA_Achr9P03450_001	Banana	cytosol, nucleus, peroxisome	50.35	30.36
EES11417	Sorghum	peroxisome	26.76	25.59
GSMUA_Achr10P...	Banana	cytosol	47.89	25.23
OQU77380	Sorghum	mitochondrion	28.87	25.08
EES11416	Sorghum	mitochondrion, peroxisome, plastid	26.06	24.92

Protein Annotations

Gene3D:3.40.50.720	MapMan:50.1.1	EntrezGene:8086043	UniProt:A0A1Z5RL91	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	EnsemblPlants:OQU84126
ProteinID:OQU84126	ProteinID:OQU84126.1	PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061
PANTHER:PTHR42898	PANTHER:PTHR42898:SF12	InterPro:SDR_fam	SMART:SM00822	EnsemblPlantsGene:SORBI_3005G231800	SUPFAM:SSF51735
InterPro:Sc_DH/Rdtase_CS	TMHMM:TMhelix	UniParc:UPI0001A86883	RefSeq:XP_002450078.1	:	:

Description

hypothetical protein

Coordinates

chr5:+:71788802..71789795

Molecular Weight (calculated)

29638.5 Da

IEP (calculated)

8.897

GRAVY (calculated)

0.060

Length

284 amino acids

Sequence
(BLAST)

001: MAATGSGSGG RQNEEARRRW SLAGKTALVT GGTKGIGLAI VEELASLGAR VHTCSRTAGD LDACRRRWAD KGAGDNVITT SVCDVSSERD RENLVATVRD
101: LFGGSLHILV NNAGGSLYRP AAATTPDDYA RVMATNLDSC FHLSRLAHPL LRRVEAADGG AVVVHMSSVA AFVAYPALSA YSVSKGALQP LTRSLAAEWA
201: PHGVRVNCVA PGVIDSTGIS GTTLGDAGRA RRLAEMEMSR VPMRRFGTPQ EVAALVAFLC MPAASYITGQ VICIDGGRTV AAKL

Best Arabidopsis Sequence Match ( AT1G07440.1 )
(BLAST)

001: MAGAEQSQRW SLKAKTVLVT GGTKGIGHAI VEEFAGFGAV IHTCARNEYE LNECLSKWQK KGFQVTGSVC DASLRPEREK LMQTVSSMFG GKLDILINNL
101: GAIRSKPTLD YTAEDFSFHI STNLESAYHL SQLAHPLLKA SGCGNIIFMS SIAGVVSASV GSIYSATKGA LNQLARNLAC EWASDGIRAN AVAPAVIATP
201: LAEAVYDDEF KKVVISRKPL GRFGEPEEVS SLVAFLCMPA ASYITGQTIC VDGGLTVNGF SYQPQG

Arabidopsis Description

Tropinone reductase homolog At1g07440 [Source:UniProtKB/Swiss-Prot;Acc:P0DKI3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.