Factsheet for VIT_19s0085g00500.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13054	Soybean	nucleus	86.2	85.91
Solyc07g066630.2.1	Tomato	plastid	86.2	85.62
KRH44885	Soybean	nucleus	84.85	84.56
CDX73802	Canola	peroxisome	83.5	83.22
VIT_01s0011g01520.t01	Wine grape	peroxisome	82.49	82.49
Bra034728.1-P	Field mustard	cytosol	81.14	81.97
CDY08402	Canola	cytosol	81.14	81.97
Bra001471.1-P	Field mustard	peroxisome	82.15	81.88
CDY00799	Canola	peroxisome	82.15	81.88
AT3G12800.1	Thale cress	peroxisome	82.15	81.88
GSMUA_Achr3P23590_001	Banana	peroxisome	79.8	79.8
GSMUA_Achr2P01480_001	Banana	peroxisome	79.46	79.46
VIT_17s0000g08740.t01	Wine grape	cytosol	32.66	78.86
VIT_06s0004g05400.t01	Wine grape	cytosol	11.78	31.53
VIT_06s0004g05310.t01	Wine grape	cytosol	11.78	30.97
VIT_06s0004g05440.t01	Wine grape	cytosol	8.42	30.49
VIT_06s0004g05320.t01	Wine grape	endoplasmic reticulum, peroxisome, plastid	25.25	29.76
VIT_06s0004g05280.t01	Wine grape	cytosol, nucleus, peroxisome	24.92	29.37
VIT_08s0007g00900.t01	Wine grape	mitochondrion, plastid	25.59	29.01
VIT_08s0007g00920.t01	Wine grape	peroxisome	25.59	28.46
VIT_06s0004g05380.t01	Wine grape	plastid	25.59	28.15
VIT_06s0004g05430.t01	Wine grape	mitochondrion, nucleus, peroxisome	25.25	27.78
VIT_13s0019g02140.t01	Wine grape	peroxisome	25.25	27.68
VIT_06s0004g05370.t01	Wine grape	peroxisome	23.23	27.38
VIT_13s0019g02130.t01	Wine grape	peroxisome	24.24	26.87
VIT_13s0019g02180.t01	Wine grape	peroxisome, plasma membrane, plastid	23.91	26.49
VIT_08s0007g00890.t01	Wine grape	peroxisome	22.22	26.4
VIT_06s0004g05330.t01	Wine grape	peroxisome	22.56	26.38
VIT_14s0128g00340.t01	Wine grape	plastid	28.28	24.63
VIT_06s0004g05360.t01	Wine grape	cytosol, mitochondrion, plastid	19.53	24.17
VIT_13s0019g02170.t01	Wine grape	mitochondrion, nucleus, peroxisome, plastid	22.56	23.51
VIT_06s0004g05450.t01	Wine grape	plasma membrane	14.14	23.33
VIT_06s0004g05390.t01	Wine grape	cytosol, plasma membrane, plastid	17.85	21.54
VIT_00s0516g00030.t01	Wine grape	cytosol, peroxisome	24.92	7.19

Protein Annotations

EntrezGene:100248493	wikigene:100248493	Gene3D:3.40.50.720	MapMan:5.7.3.5.3	ProteinID:CBI24176	ProteinID:CBI24176.3
UniProt:D7T0V6	EMBL:FN595503	EntrezGene:LOC100248493	wikigene:LOC100248493	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561
PRINTS:PR00080	PRINTS:PR00081	PANTHER:PTHR43296	PANTHER:PTHR43296:SF1	InterPro:SDR_fam	SUPFAM:SSF51735
TIGR:TC57281	UniParc:UPI00015CCCB7	ArrayExpress:VIT_19s0085g00500	EnsemblPlantsGene:VIT_19s0085g00500	EnsemblPlants:VIT_19s0085g00500.t01	unigene:Vvi.2099
RefSeq:XP_002262755	RefSeq:XP_002262755.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr19:-:22886998..22896598

Molecular Weight (calculated)

31559.1 Da

IEP (calculated)

9.904

GRAVY (calculated)

-0.039

Length

297 amino acids

Sequence
(BLAST)

001: MESPFKADVL KGKVALLTGG GSGIGFEIST QFGLHGASIA IMGRRKQVLD SAVSGLCSQG IPAVGFVGDV RKQEDAKRVV ESTVKHFGRL DILVNAAAGN
101: FLVSSEDLSP NGFRTVMDID SVGTFTMCHE ALKYLKKGGP GRSFSSGGSI LNISATLHYT AAWYQIHVSA AKAAVDATTR NLALEWGTDY DIRVNGIAPG
201: PIGDTAGMSK LAPEEISNKA REIMPLYKLG EKWDIAMAAL YLASDAGKYI NGTTLVVDGG LWLSRPRHLP KEAVKQLSRA VEKRSRGVPV GVPKSKL

Best Arabidopsis Sequence Match ( AT3G12800.1 )
(BLAST)

001: MDSPFKPDVV RGQVALITGG GSGIGFEISS QFGKHGASIA IMGRRKQVLD DAVSALRSLG IQAIGLEGDV RKQEDARRVV EATFQHFGKL DILVNAAAGN
101: FLAAAEDLSP NGFRTVLDID AVGTFNMCHA ALKYLKKGAP GRDSSSGGGS IINISATLHY TASWYQIHVS AAKAAVDATT RNLALEWGTD YDIRVNGIAP
201: GPIGGTPGMS KLVPEEIENK TREYMPLYKV GEKWDIAMAA LYLSCDSGKY VSGLTMVVDG GLWLSKPRHL PKEAVKQLSR AVEKRSRAKP VGLPTSKL

Arabidopsis Description

SDRBUncharacterized protein At3g12790 [Source:UniProtKB/TrEMBL;Acc:Q0WMN4]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.