Factsheet for AT1G54870.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021324.1-P	Field mustard	cytosol	80.71	94.12
CDY43488	Canola	cytosol	80.42	93.77
CDY17559	Canola	cytoskeleton, nucleus, peroxisome	78.93	92.68
AT3G05260.1	Thale cress	cytosol	67.06	78.2
KRH33956	Soybean	endoplasmic reticulum	67.66	77.82
KRG92837	Soybean	endoplasmic reticulum, nucleus	67.66	77.82
GSMUA_Achr4P24690_001	Banana	cytosol	58.75	66.44
GSMUA_Achr4P29030_001	Banana	cytosol	53.71	61.99
TraesCS1A01G083800.1	Wheat	plastid	63.2	61.38
TraesCS1D01G084900.1	Wheat	mitochondrion, plastid	62.61	60.81
TraesCS1B01G101100.1	Wheat	plastid	62.61	60.63
OQU77380	Sorghum	mitochondrion	57.57	59.33
Os05t0140800-01	Rice	plastid	59.64	55.07
Zm00001d006796_P001	Maize	extracellular	58.46	55.03
HORVU1Hr1G018140.5	Barley	extracellular, mitochondrion	62.91	53.13
AT2G29150.1	Thale cress	peroxisome	24.93	31.34
AT2G29350.1	Thale cress	plastid	24.63	30.86
AT2G29290.2	Thale cress	plastid	23.74	30.53
AT5G06060.1	Thale cress	peroxisome	23.74	30.3
AT2G29310.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	22.55	29.01
AT1G07440.1	Thale cress	mitochondrion	22.85	28.95
AT2G29360.1	Thale cress	cytosol	23.15	28.78
AT2G30670.1	Thale cress	cytosol, nucleus, peroxisome	21.66	27.86
AT2G29330.1	Thale cress	cytosol, peroxisome, plastid	21.36	27.69
AT4G05530.1	Thale cress	peroxisome	20.77	27.56
AT1G07450.1	Thale cress	cytosol, nucleus, peroxisome	21.07	27.31
AT3G12800.1	Thale cress	peroxisome	24.04	27.18
AT2G07640.1	Thale cress	mitochondrion	12.46	26.92
AT2G29370.1	Thale cress	peroxisome	21.36	26.87
AT2G29320.1	Thale cress	mitochondrion	20.18	25.28
AT2G29170.1	Thale cress	cytosol	8.01	25.23
AT2G29300.2	Thale cress	extracellular	20.77	24.48
AT2G29260.1	Thale cress	plastid	22.26	23.29
AT2G29340.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	21.07	23.13
AT1G36580.1	Thale cress	nucleus	9.5	16.41

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	EntrezGene:841926	UniProt:A0A1P8AU36	ProteinID:ANM60162.1	ArrayExpress:AT1G54870
EnsemblPlantsGene:AT1G54870	RefSeq:AT1G54870	TAIR:AT1G54870	RefSeq:AT1G54870-TAIR-G	EnsemblPlants:AT1G54870.2	Unigene:At.16081
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114
InterPro:NAD(P)-bd_dom_sf	RefSeq:NP_001322466.1	PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061
PANTHER:PTHR43348	PANTHER:PTHR43348:SF4	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI0008485B81

Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:TAIR;Acc:AT1G54870]

Coordinates

chr1:+:20458952..20460647

Molecular Weight (calculated)

36969.1 Da

IEP (calculated)

8.755

GRAVY (calculated)

-0.264

Length

337 amino acids

Sequence
(BLAST)

001: MAMNVLCRVF TSSRVLSSNV TFSFSQIPNN TKKPLLEKRR LSPRVCLRAM ASEKQKQHAQ PGKEHVMESS PQFSSSDYQP SNKLRGKVAL ITGGDSGIGR
101: AVGYCFASEG ATVAFTYVKG QEEKDAQETL QMLKEVKTSD SKEPIAIPTD LGFDENCKRV VDEVVNAFGR IDVLINNAAE QYESSTIEEI DEPRLERVFR
201: TNIFSYFFLT RHALKHMKEG SSIINTTSVN AYKGNASLLD YTATKGAIVA FTRGLALQLA EKGIRVNGVA PGPIWTPLIP ASFNEEKIKN FGSEVPMKRA
301: GQPIEVAPSY VFLACNHCSS YFTGQVLHPN GGAVVNA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.