Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- cytosol 2
- peroxisome 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35231 | Canola | peroxisome | 46.06 | 94.35 |
| Bra029476.1-P | Field mustard | peroxisome | 94.49 | 94.12 |
| CDX94534 | Canola | peroxisome | 94.09 | 93.73 |
| CDY16690 | Canola | peroxisome | 94.09 | 93.73 |
| KRH02005 | Soybean | endoplasmic reticulum, nucleus | 74.02 | 74.6 |
| Solyc04g014670.2.1 | Tomato | plastid | 72.44 | 72.73 |
| PGSC0003DMT400034518 | Potato | peroxisome | 70.08 | 70.08 |
| EER98384 | Sorghum | peroxisome | 69.29 | 69.57 |
| Zm00001d019439_P001 | Maize | extracellular | 69.29 | 69.57 |
| KRH36525 | Soybean | endoplasmic reticulum | 69.29 | 69.02 |
| KRH11511 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole | 69.29 | 69.02 |
| EES19901 | Sorghum | peroxisome | 68.5 | 68.77 |
| GSMUA_Achr3P01040_001 | Banana | cytosol | 25.98 | 68.75 |
| TraesCS5A01G164400.1 | Wheat | peroxisome | 68.11 | 68.38 |
| TraesCS5D01G169300.1 | Wheat | peroxisome | 68.11 | 68.38 |
| HORVU0Hr1G012410.1 | Barley | peroxisome | 67.72 | 67.98 |
| TraesCS5B01G161900.1 | Wheat | peroxisome | 66.93 | 67.19 |
| Os09t0133200-01 | Rice | peroxisome | 66.14 | 66.4 |
| GSMUA_Achr3P01030_001 | Banana | mitochondrion | 55.91 | 64.25 |
| Zm00001d038897_P001 | Maize | peroxisome | 67.32 | 61.29 |
| KRH70902 | Soybean | cytosol | 24.02 | 55.45 |
| HORVU5Hr1G049670.1 | Barley | peroxisome | 51.18 | 51.38 |
| AT2G29330.1 | Thale cress | cytosol, peroxisome, plastid | 32.68 | 31.92 |
| AT1G07440.1 | Thale cress | mitochondrion | 33.07 | 31.58 |
| AT5G06060.1 | Thale cress | peroxisome | 32.68 | 31.44 |
| AT2G29150.1 | Thale cress | peroxisome | 33.07 | 31.34 |
| AT2G29370.1 | Thale cress | peroxisome | 31.89 | 30.22 |
| AT2G30670.1 | Thale cress | cytosol, nucleus, peroxisome | 31.1 | 30.15 |
| AT2G29290.2 | Thale cress | plastid | 31.1 | 30.15 |
| AT2G29170.1 | Thale cress | cytosol | 12.6 | 29.91 |
| AT2G29350.1 | Thale cress | plastid | 31.5 | 29.74 |
| AT1G07450.1 | Thale cress | cytosol, nucleus, peroxisome | 30.32 | 29.62 |
| AT2G29360.1 | Thale cress | cytosol | 31.5 | 29.52 |
| AT2G29320.1 | Thale cress | mitochondrion | 29.92 | 28.25 |
| AT2G29310.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 28.35 | 27.48 |
| AT2G29340.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 32.28 | 26.71 |
| AT2G29300.2 | Thale cress | extracellular | 29.92 | 26.57 |
| AT2G29260.1 | Thale cress | plastid | 33.46 | 26.4 |
| AT3G05260.1 | Thale cress | cytosol | 29.92 | 26.3 |
| AT3G12800.1 | Thale cress | peroxisome | 29.13 | 24.83 |
| AT2G07640.1 | Thale cress | mitochondrion | 13.39 | 21.79 |
| AT1G54870.2 | Thale cress | plastid | 27.56 | 20.77 |
| VIT_00s0516g00030.t01 | Wine grape | cytosol, peroxisome | 70.47 | 17.4 |
| AT1G36580.1 | Thale cress | nucleus | 11.81 | 15.38 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:35.1 | EntrezGene:825905 | ProteinID:AAD48959.1 | ProteinID:AEE82532.1 | ArrayExpress:AT4G05530 |
| EnsemblPlantsGene:AT4G05530 | RefSeq:AT4G05530 | TAIR:AT4G05530 | RefSeq:AT4G05530-TAIR-G | EnsemblPlants:AT4G05530.1 | TAIR:AT4G05530.1 |
| EMBL:AY035106 | EMBL:AY087807 | EMBL:AY113900 | ProteinID:CAB81095.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005777 | GO:GO:0006629 |
| GO:GO:0006631 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009653 | GO:GO:0009719 |
| GO:GO:0009987 | GO:GO:0016049 | GO:GO:0016491 | GO:GO:0030154 | GO:GO:0040007 | GO:GO:0048767 |
| GO:GO:0055114 | GO:GO:0080024 | GO:GO:0080026 | Symbol:IBR1 | InterPro:NAD(P)-bd_dom_sf | RefSeq:NP_567300.1 |
| PFAM:PF13561 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001170 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00080 |
| PRINTS:PR00081 | ScanProsite:PS00061 | PANTHER:PTHR43943 | PANTHER:PTHR43943:SF2 | UniProt:Q9S9W2 | InterPro:SDR_fam |
| SUPFAM:SSF51735 | InterPro:Sc_DH/Rdtase_CS | UniParc:UPI00000A8D73 | SEG:seg | : | : |
Description
SDRAShort-chain dehydrogenase/reductase SDRA [Source:UniProtKB/Swiss-Prot;Acc:Q9S9W2]
Coordinates
chr4:+:2816317..2818518
Molecular Weight (calculated)
26766.4 Da
IEP (calculated)
8.680
GRAVY (calculated)
0.115
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKKLPRRLE GKVAIVTAST QGIGFGITER FGLEGASVVV SSRKQANVDE AVAKLKSKGI DAYGIVCHVS NAQHRRNLVE KTVQKYGKID IVVCNAAANP
101: STDPILSSKE AVLDKLWEIN VKSSILLLQD MAPHLEKGSS VIFITSIAGF SPQGAMAMYG VTKTALLGLT KALAAEMAPD TRVNAVAPGF VPTHFASFIT
201: GSSEVREGIE EKTLLNRLGT TGDMAAAAAF LASDDSSYIT GETLVVAGGM PSRL
101: STDPILSSKE AVLDKLWEIN VKSSILLLQD MAPHLEKGSS VIFITSIAGF SPQGAMAMYG VTKTALLGLT KALAAEMAPD TRVNAVAPGF VPTHFASFIT
201: GSSEVREGIE EKTLLNRLGT TGDMAAAAAF LASDDSSYIT GETLVVAGGM PSRL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.