Factsheet for GSMUA_Achr3P01040_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 2
mitochondrion 1
cytosol 2
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	peroxisome
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70902	Soybean	cytosol	62.5	54.55
EER98384	Sorghum	peroxisome	69.79	26.48
Zm00001d019439_P001	Maize	extracellular	68.75	26.09
AT4G05530.1	Thale cress	peroxisome	68.75	25.98
Bra029476.1-P	Field mustard	peroxisome	68.75	25.88
CDY16690	Canola	peroxisome	68.75	25.88
KRH02005	Soybean	endoplasmic reticulum, nucleus	67.71	25.79
EES19901	Sorghum	peroxisome	67.71	25.69
TraesCS5A01G164400.1	Wheat	peroxisome	67.71	25.69
CDX94534	Canola	peroxisome	67.71	25.49
TraesCS5D01G169300.1	Wheat	peroxisome	66.67	25.3
HORVU0Hr1G012410.1	Barley	peroxisome	66.67	25.3
Os09t0133200-01	Rice	peroxisome	66.67	25.3
PGSC0003DMT400034518	Potato	peroxisome	66.67	25.2
Solyc04g014670.2.1	Tomato	plastid	65.62	24.9
KRH36525	Soybean	endoplasmic reticulum	65.62	24.71
CDX76382	Canola	cytosol, mitochondrion, peroxisome	65.62	24.51
CDY27447	Canola	cytosol, mitochondrion, peroxisome	65.62	24.42
KRH11511	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	64.58	24.31
Bra020854.1-P	Field mustard	cytosol, mitochondrion, peroxisome	64.58	24.12
TraesCS5B01G161900.1	Wheat	peroxisome	63.54	24.11
HORVU5Hr1G049670.1	Barley	peroxisome	63.54	24.11
Zm00001d038897_P001	Maize	peroxisome	65.62	22.58
GSMUA_Achr5P04570_001	Banana	cytosol	29.17	22.05
GSMUA_Achr10P...	Banana	cytosol	33.33	11.81
GSMUA_Achr9P03470_001	Banana	cytosol	31.25	11.15
GSMUA_Achr11P...	Banana	cytosol	30.21	10.82
GSMUA_Achr9P03440_001	Banana	cytosol	29.17	10.33
GSMUA_Achr9P03430_001	Banana	cytosol, mitochondrion, plastid	28.12	10.31
GSMUA_Achr3P23590_001	Banana	peroxisome	31.25	10.1
GSMUA_Achr2P01480_001	Banana	peroxisome	30.21	9.76
GSMUA_Achr5P04560_001	Banana	cytosol	32.29	8.99
GSMUA_Achr9P03420_001	Banana	mitochondrion	27.08	8.64
GSMUA_Achr4P29030_001	Banana	cytosol	23.96	7.88
GSMUA_Achr6P34030_001	Banana	cytosol	29.17	7.73
GSMUA_Achr4P24690_001	Banana	cytosol	23.96	7.72
GSMUA_Achr3P01030_001	Banana	mitochondrion	17.71	7.69
VIT_00s0516g00030.t01	Wine grape	cytosol, peroxisome	72.92	6.8
GSMUA_Achr9P03450_001	Banana	cytosol, nucleus, peroxisome	30.21	6.16
GSMUA_Achr10P...	Banana	cytosol	33.33	5.94
GSMUA_Achr1P18200_001	Banana	cytosol	6.25	3.45
CDY35231	Canola	peroxisome	4.17	3.23

Protein Annotations

EnsemblPlants:GSMUA_Achr3P01040_001	EnsemblPlants:GSMUA_Achr3T01040_001	EnsemblPlantsGene:GSMUA_Achr3G01040_001	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR43943	PANTHER:PTHR43943:SF2	PFAM:PF00106	SEG:seg	SUPFAM:SSF51735	UniParc:UPI000296033D
UniProt:M0SAS2	MapMan:35.1	:	:	:	:

Description

Dehydrogenase/reductase SDR family member 4 [Source:GMGC_GENE;Acc:GSMUA_Achr3G01040_001]

Coordinates

chr3:-:775470..776302

Molecular Weight (calculated)

10464.1 Da

IEP (calculated)

9.381

GRAVY (calculated)

0.346

Length

96 amino acids

Sequence
(BLAST)

1: MDAKGRLEGK VAIVTASTQG IGFAIAQRLG LEGAAVVVSS RKQKNVDEAV EMLRSKGIEA MGVVCHVSNP QHRKDLIEKT VQVMLFLFLL FLLLLE

Best Arabidopsis Sequence Match ( AT4G05530.1 )
(BLAST)

001: MEKKLPRRLE GKVAIVTAST QGIGFGITER FGLEGASVVV SSRKQANVDE AVAKLKSKGI DAYGIVCHVS NAQHRRNLVE KTVQKYGKID IVVCNAAANP
101: STDPILSSKE AVLDKLWEIN VKSSILLLQD MAPHLEKGSS VIFITSIAGF SPQGAMAMYG VTKTALLGLT KALAAEMAPD TRVNAVAPGF VPTHFASFIT
201: GSSEVREGIE EKTLLNRLGT TGDMAAAAAF LASDDSSYIT GETLVVAGGM PSRL

Arabidopsis Description

SDRAShort-chain dehydrogenase/reductase SDRA [Source:UniProtKB/Swiss-Prot;Acc:Q9S9W2]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.