Factsheet for Solyc04g014670.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
peroxisome 3
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	peroxisome
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034518	Potato	peroxisome	81.82	81.5
CDY35231	Canola	peroxisome	38.74	79.03
KRH02005	Soybean	endoplasmic reticulum, nucleus	77.47	77.78
KRH36525	Soybean	endoplasmic reticulum	75.1	74.51
KRH11511	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	75.1	74.51
Bra029476.1-P	Field mustard	peroxisome	73.52	72.94
CDX94534	Canola	peroxisome	73.52	72.94
CDY16690	Canola	peroxisome	73.52	72.94
AT4G05530.1	Thale cress	peroxisome	72.73	72.44
CDY27447	Canola	cytosol, mitochondrion, peroxisome	71.54	70.16
CDX76382	Canola	cytosol, mitochondrion, peroxisome	71.15	70.04
Bra020854.1-P	Field mustard	cytosol, mitochondrion, peroxisome	70.75	69.65
TraesCS5A01G164400.1	Wheat	peroxisome	67.98	67.98
TraesCS5D01G169300.1	Wheat	peroxisome	67.98	67.98
HORVU0Hr1G012410.1	Barley	peroxisome	67.59	67.59
Zm00001d019439_P001	Maize	extracellular	67.59	67.59
TraesCS5B01G161900.1	Wheat	peroxisome	67.19	67.19
Os09t0133200-01	Rice	peroxisome	66.8	66.8
EES19901	Sorghum	peroxisome	66.8	66.8
EER98384	Sorghum	peroxisome	66.8	66.8
GSMUA_Achr3P01040_001	Banana	cytosol	24.9	65.62
GSMUA_Achr3P01030_001	Banana	mitochondrion	54.94	62.9
KRH70902	Soybean	cytosol	26.88	61.82
Zm00001d038897_P001	Maize	peroxisome	64.43	58.42
HORVU5Hr1G049670.1	Barley	peroxisome	50.99	50.99
Solyc04g007400.2.1	Tomato	cytosol	33.6	32.57
Solyc04g054950.2.1	Tomato	mitochondrion, peroxisome, plastid	33.6	32.32
Solyc03g096650.1.1	Tomato	cytosol	11.07	31.46
Solyc09g011140.2.1	Tomato	cytosol	32.41	30.37
Solyc10g086620.1.1	Tomato	plastid	32.41	30.04
Solyc03g096640.2.1	Tomato	mitochondrion, plastid	31.62	29.85
Solyc06g083490.2.1	Tomato	cytosol, peroxisome, plastid	21.74	29.73
Solyc09g011130.1.1	Tomato	plastid	30.43	29.28
Solyc10g081560.1.1	Tomato	cytosol, nucleus, peroxisome	30.43	29.17
Solyc06g083480.2.1	Tomato	cytosol	14.62	28.68
Solyc03g096660.1.1	Tomato	extracellular	21.34	27.69
Solyc06g083470.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	27.67	26.02
Solyc06g005720.2.1	Tomato	plastid	30.83	25.91
Solyc07g066630.2.1	Tomato	plastid	29.25	24.75
Solyc01g098850.2.1	Tomato	extracellular	25.3	18.82
VIT_00s0516g00030.t01	Wine grape	cytosol, peroxisome	71.54	17.59

Protein Annotations

EnsemblPlants:Solyc04g014670.2.1	EnsemblPlantsGene:Solyc04g014670.2	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	InterPro:Sc_DH/Rdtase_CS
PANTHER:PTHR43943	PANTHER:PTHR43943:SF2	PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061
SEG:seg	SUPFAM:SSF51735	UniParc:UPI0002766615	UniProt:K4BPX0	MapMan:35.1	:

Description

No Description!

Coordinates

chr4:+:4934139..4937078

Molecular Weight (calculated)

26897.6 Da

IEP (calculated)

9.017

GRAVY (calculated)

0.114

Length

253 amino acids

Sequence
(BLAST)

001: MEKIGKRFEG KVVIVTASSQ GIGFSIAQRL GFEGASVVIS SRKQENVDEA VKKLRDGGIE VLGLVCHVSN AQQRKNLIDK TIQKYGKLDV VVSNAAVNPS
101: VDAILETKSS VLDKLWDINV KAAILLLQDA VPYLKKGSSV VLISSISGYS PPASMGMYGV TKTALLGLTK ALAAEMSPDT RVNCVAPGFV PTHFADFITS
201: NEQVRREIEG KTLLNRLGTT HDMAAAVAYL ASDDASYVTG ETLVVAGGMP SRL

Best Arabidopsis Sequence Match ( AT4G05530.1 )
(BLAST)

001: MEKKLPRRLE GKVAIVTAST QGIGFGITER FGLEGASVVV SSRKQANVDE AVAKLKSKGI DAYGIVCHVS NAQHRRNLVE KTVQKYGKID IVVCNAAANP
101: STDPILSSKE AVLDKLWEIN VKSSILLLQD MAPHLEKGSS VIFITSIAGF SPQGAMAMYG VTKTALLGLT KALAAEMAPD TRVNAVAPGF VPTHFASFIT
201: GSSEVREGIE EKTLLNRLGT TGDMAAAAAF LASDDSSYIT GETLVVAGGM PSRL

Arabidopsis Description

SDRAShort-chain dehydrogenase/reductase SDRA [Source:UniProtKB/Swiss-Prot;Acc:Q9S9W2]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.