Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- plastid 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g083480.2.1 | Tomato | cytosol | 65.95 | 94.57 |
| Solyc03g096660.1.1 | Tomato | extracellular | 67.57 | 64.1 |
| Solyc03g096640.2.1 | Tomato | mitochondrion, plastid | 76.76 | 52.99 |
| Solyc06g083470.2.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 76.22 | 52.42 |
| Solyc09g011140.2.1 | Tomato | cytosol | 62.16 | 42.59 |
| Solyc09g011130.1.1 | Tomato | plastid | 58.38 | 41.06 |
| Solyc06g005720.2.1 | Tomato | plastid | 62.7 | 38.54 |
| Solyc10g081560.1.1 | Tomato | cytosol, nucleus, peroxisome | 54.59 | 38.26 |
| Solyc04g054950.2.1 | Tomato | mitochondrion, peroxisome, plastid | 52.43 | 36.88 |
| Solyc04g007400.2.1 | Tomato | cytosol | 51.89 | 36.78 |
| Solyc10g086620.1.1 | Tomato | plastid | 50.81 | 34.43 |
| Solyc04g014670.2.1 | Tomato | plastid | 29.73 | 21.74 |
| Solyc07g066630.2.1 | Tomato | plastid | 28.65 | 17.73 |
| Solyc01g098850.2.1 | Tomato | extracellular | 32.43 | 17.65 |
| Solyc03g096650.1.1 | Tomato | cytosol | 7.03 | 14.61 |
Protein Annotations
| EnsemblPlants:Solyc06g083490.2.1 | EnsemblPlantsGene:Solyc06g083490.2 | Gene3D:3.40.50.720 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam | InterPro:Sc_DH/Rdtase_CS |
| PANTHER:PTHR42898 | PANTHER:PTHR42898:SF3 | PFAM:PF13561 | PRINTS:PR00080 | PRINTS:PR00081 | ScanProsite:PS00061 |
| SUPFAM:SSF51735 | UniParc:UPI0002765DEB | UniProt:K4CAK4 | MapMan:50.1.1 | : | : |
Description
No Description!
Coordinates
chr6:-:48892232..48896558
Molecular Weight (calculated)
19951.9 Da
IEP (calculated)
4.916
GRAVY (calculated)
0.101
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKVSLEFDG KLNILINNVG TNIWKPTTEY TGEDYAHMMA TNLESSFHLS QLANPLLKSS GVGSIVFLSS VAGLVHLSGT SIYGATKGAM NQLTRNLACE
101: WAKDGIRVNG VAPWFINTPL VEQVLGDKEF LEGVVSRTPL KRPGEVEEVS SMVAYLCLPA ASYVTGQVIA VDGGFTVYGF QQPGY
101: WAKDGIRVNG VAPWFINTPL VEQVLGDKEF LEGVVSRTPL KRPGEVEEVS SMVAYLCLPA ASYVTGQVIA VDGGFTVYGF QQPGY
001: MAKAGENSRD KSRWSLEGMT ALVTGGSKGL GEAVVEELAM LGARVHTCAR DETQLQERLR EWQAKGFEVT TSVCDVSSRE QREKLMETVS SVFQGKLNIL
101: VNNAGTGIIK PSTEYTAEDY SFLMATNLES AFHLSQIAHP LLKASGSGSI VFMSSVAGLV HTGASIYGAS KGAMNQLGRS LACEWASDNI RVNSVCPWVI
201: TTPLTSFIFS DEKLRKAVED KTPMGRVGEA NEVSSLVAFL CFPAASYITG QTICVDGGAS VNGFSFKP
101: VNNAGTGIIK PSTEYTAEDY SFLMATNLES AFHLSQIAHP LLKASGSGSI VFMSSVAGLV HTGASIYGAS KGAMNQLGRS LACEWASDNI RVNSVCPWVI
201: TTPLTSFIFS DEKLRKAVED KTPMGRVGEA NEVSSLVAFL CFPAASYITG QTICVDGGAS VNGFSFKP
Arabidopsis Description
Tropinone reductase homolog At2g29150 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW03]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.