Factsheet for PGSC0003DMT400034518

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome, plastid
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	peroxisome
PTS1:	peroxisome
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g014670.2.1	Tomato	plastid	81.5	81.82
KRH02005	Soybean	endoplasmic reticulum, nucleus	74.41	75.0
CDY35231	Canola	peroxisome	35.43	72.58
KRH36525	Soybean	endoplasmic reticulum	72.44	72.16
KRH11511	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	72.44	72.16
CDX94534	Canola	peroxisome	70.47	70.2
CDY27447	Canola	cytosol, mitochondrion, peroxisome	71.26	70.16
AT4G05530.1	Thale cress	peroxisome	70.08	70.08
Bra029476.1-P	Field mustard	peroxisome	70.08	69.8
CDY16690	Canola	peroxisome	70.08	69.8
CDX76382	Canola	cytosol, mitochondrion, peroxisome	70.08	69.26
Bra020854.1-P	Field mustard	cytosol, mitochondrion, peroxisome	69.69	68.87
EER98384	Sorghum	peroxisome	67.72	67.98
HORVU0Hr1G012410.1	Barley	peroxisome	66.93	67.19
TraesCS5D01G169300.1	Wheat	peroxisome	66.93	67.19
Zm00001d019439_P001	Maize	extracellular	66.93	67.19
TraesCS5A01G164400.1	Wheat	peroxisome	66.54	66.8
GSMUA_Achr3P01040_001	Banana	cytosol	25.2	66.67
Os09t0133200-01	Rice	peroxisome	66.14	66.4
EES19901	Sorghum	peroxisome	66.14	66.4
TraesCS5B01G161900.1	Wheat	peroxisome	65.75	66.01
KRH70902	Soybean	cytosol	25.98	60.0
GSMUA_Achr3P01030_001	Banana	mitochondrion	51.97	59.73
Zm00001d038897_P001	Maize	peroxisome	64.17	58.42
HORVU5Hr1G049670.1	Barley	peroxisome	51.18	51.38
PGSC0003DMT400053141	Potato	mitochondrion, peroxisome, plastid	33.07	31.94
PGSC0003DMT400015320	Potato	peroxisome	30.71	29.89
PGSC0003DMT400049413	Potato	endoplasmic reticulum, peroxisome, plastid	32.68	29.75
PGSC0003DMT400043159	Potato	mitochondrion	31.1	29.37
PGSC0003DMT400072533	Potato	peroxisome	29.53	28.41
PGSC0003DMT400022974	Potato	peroxisome	29.53	27.78
PGSC0003DMT400043152	Potato	peroxisome	29.13	26.71
PGSC0003DMT400073652	Potato	cytosol, peroxisome, plastid	25.59	22.18
PGSC0003DMT400022973	Potato	peroxisome	31.1	21.24
PGSC0003DMT400056868	Potato	cytosol, peroxisome, plastid	13.78	20.47
VIT_00s0516g00030.t01	Wine grape	cytosol, peroxisome	68.11	16.81

Protein Annotations

EntrezGene:102604081	Gene3D:3.40.50.720	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	UniProt:M1B0T9	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561
EnsemblPlantsGene:PGSC0003DMG400013266	PGSC:PGSC0003DMG400013266	EnsemblPlants:PGSC0003DMT400034518	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061
PANTHER:PTHR43943	PANTHER:PTHR43943:SF2	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI00029619CC
RefSeq:XP_006352379.1	SEG:seg	:	:	:	:

Description

Short-chain dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400013266]

Coordinates

chr11:-:753221..756622

Molecular Weight (calculated)

27178.0 Da

IEP (calculated)

9.735

GRAVY (calculated)

0.085

Length

254 amino acids

Sequence
(BLAST)

001: MDKKLGQRFE GKVAIITAST QGIGFSIAER LGLEGGFVVI SSRKQKNVDE AVQKLRDRGI EVFGVVCHVS NAQQRKNLFD KTIQKYGKLD VIVSNAAVNP
101: TVATILETKE QTLDKLWDIN VKAAILLLQD AAPYLQNGSS VVIISSIAAY RPPASMGMYG VTKTALLGLT KALAAEMAPS TRVNCVAPGF VPTHFAKFIT
201: GDANLRRELE AKTLLSRLGT TQDMAAATAY LASDDAAYVT GETLVVAGGM QSRL

Best Arabidopsis Sequence Match ( AT4G05530.1 )
(BLAST)

001: MEKKLPRRLE GKVAIVTAST QGIGFGITER FGLEGASVVV SSRKQANVDE AVAKLKSKGI DAYGIVCHVS NAQHRRNLVE KTVQKYGKID IVVCNAAANP
101: STDPILSSKE AVLDKLWEIN VKSSILLLQD MAPHLEKGSS VIFITSIAGF SPQGAMAMYG VTKTALLGLT KALAAEMAPD TRVNAVAPGF VPTHFASFIT
201: GSSEVREGIE EKTLLNRLGT TGDMAAAAAF LASDDSSYIT GETLVVAGGM PSRL

Arabidopsis Description

SDRAShort-chain dehydrogenase/reductase SDRA [Source:UniProtKB/Swiss-Prot;Acc:Q9S9W2]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.