Factsheet for PGSC0003DMT400072533

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 2
plastid 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g081560.1.1	Tomato	cytosol, nucleus, peroxisome	95.08	95.08
PGSC0003DMT400015320	Potato	peroxisome	64.77	65.52
PGSC0003DMT400022974	Potato	peroxisome	62.88	61.48
VIT_08s0007g00900.t01	Wine grape	mitochondrion, plastid	59.85	60.31
VIT_08s0007g00920.t01	Wine grape	peroxisome	57.58	56.93
KRH00029	Soybean	peroxisome	20.83	56.12
KRH00026	Soybean	cytosol, mitochondrion, peroxisome	56.06	56.06
PGSC0003DMT400053141	Potato	mitochondrion, peroxisome, plastid	54.92	55.13
PGSC0003DMT400043159	Potato	mitochondrion	55.3	54.28
KRH00030	Soybean	cytosol	54.55	54.14
KRH49153	Soybean	cytosol	53.03	52.63
PGSC0003DMT400049413	Potato	endoplasmic reticulum, peroxisome, plastid	54.55	51.61
KRH49156	Soybean	plastid	33.33	51.46
KRH49151	Soybean	mitochondrion	51.14	50.94
PGSC0003DMT400043152	Potato	peroxisome	51.89	49.46
KRH49152	Soybean	cytosol	51.89	46.44
PGSC0003DMT400022973	Potato	peroxisome	61.74	43.82
KRH00032	Soybean	cytosol, peroxisome, plastid	29.17	42.78
PGSC0003DMT400034518	Potato	peroxisome	28.41	29.53
PGSC0003DMT400073652	Potato	cytosol, peroxisome, plastid	29.17	26.28
PGSC0003DMT400056868	Potato	cytosol, peroxisome, plastid	12.88	19.88

Protein Annotations

Gene3D:3.40.50.720	MapMan:50.1.1	EMBL:AJ307584	EMBL:AJ400815	ProteinID:CAB88214	ProteinID:CAB88214.1
ProteinID:CAC34420	ProteinID:CAC34420.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0055114	UniProt:M1CQH0	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561	EnsemblPlantsGene:PGSC0003DMG400028221
PGSC:PGSC0003DMG400028221	EnsemblPlants:PGSC0003DMT400072533	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR42898
PANTHER:PTHR42898:SF15	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	TMHMM:TMhelix	UniParc:UPI000294F754
SEG:seg	:	:	:	:	:

Description

Tropinone reductase I [Source:PGSC_GENE;Acc:PGSC0003DMG400028221]

Coordinates

chr10:+:56414554..56418758

Molecular Weight (calculated)

28749.5 Da

IEP (calculated)

6.528

GRAVY (calculated)

-0.063

Length

264 amino acids

Sequence
(BLAST)

001: MAELREKWSL KGTTALVTGG SKGIGYAIVE ELANFGARVY TCSRNENELQ ECLDIWRKKG LKVEGSVCDL LSRTEREKLM KTIEDVFDGK LNILVNNAGV
101: AIHKEAKDFT KQDYNIIMGT NFEAAYHLSQ IAYPLLKASQ NGNVIFVSSI AGFSALPSLS LYSASKGAIN QMTKNLACEW AKDNIRVNSV APAVILTPQI
201: ETAIKENPQQ KEEIDSFVVK TPLGRAGKPE EVSAVIAFLC FPAASYITGQ IIWADGGFTA NGGF

Best Arabidopsis Sequence Match ( AT5G06060.1 )
(BLAST)

001: METDKRWSLA GKTALVTGGT RGIGRAVVEE LAKFGAKVHT CSRNQEELNA CLNDWKANGL VVSGSVCDAS VRDQREKLIQ EASSAFSGKL NILINNVGTN
101: VRKPTVEYSS EEYAKIMSTN LESAFHLSQI AHPLLKASGV GSIVFISSVA GLVHLSSGSI YGATKGALNQ LTRNLACEWA SDNIRTNCVA PWYIKTSLVE
201: TLLEKKEFVE AVVSRTPLGR VGEPEEVSSL VAFLCLPASS YITGQVISVD GGFTVNGFSY AMKP

Arabidopsis Description

Tropinone reductase homolog At5g06060 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHT0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.