Factsheet for PGSC0003DMT400015320

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 3
peroxisome 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g007400.2.1	Tomato	cytosol	98.08	98.08
PGSC0003DMT400072533	Potato	peroxisome	65.52	64.77
VIT_08s0007g00900.t01	Wine grape	mitochondrion, plastid	59.39	59.16
PGSC0003DMT400022974	Potato	peroxisome	60.54	58.52
VIT_08s0007g00920.t01	Wine grape	peroxisome	58.62	57.3
KRH00029	Soybean	peroxisome	20.69	55.1
PGSC0003DMT400043159	Potato	mitochondrion	56.7	55.02
PGSC0003DMT400053141	Potato	mitochondrion, peroxisome, plastid	54.79	54.37
KRH00026	Soybean	cytosol, mitochondrion, peroxisome	53.26	52.65
PGSC0003DMT400043152	Potato	peroxisome	54.02	50.9
PGSC0003DMT400049413	Potato	endoplasmic reticulum, peroxisome, plastid	53.26	49.82
KRH00030	Soybean	cytosol	50.19	49.25
KRH49151	Soybean	mitochondrion	49.81	49.06
KRH49153	Soybean	cytosol	49.43	48.5
KRH49156	Soybean	plastid	31.42	47.95
KRH49152	Soybean	cytosol	49.43	43.73
PGSC0003DMT400022973	Potato	peroxisome	59.39	41.67
KRH00032	Soybean	cytosol, peroxisome, plastid	28.74	41.67
PGSC0003DMT400034518	Potato	peroxisome	29.89	30.71
PGSC0003DMT400073652	Potato	cytosol, peroxisome, plastid	27.59	24.57
PGSC0003DMT400056868	Potato	cytosol, peroxisome, plastid	14.94	22.81

Protein Annotations

Gene3D:3.40.50.720	MapMan:50.1.1	EMBL:AJ245634	EMBL:AJ292343	ProteinID:CAB52307	ProteinID:CAB52307.1
ProteinID:CAC19810	ProteinID:CAC19810.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0050358	GO:GO:0055114
UniProt:M1A5U6	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561	EnsemblPlantsGene:PGSC0003DMG400005974	PGSC:PGSC0003DMG400005974	EnsemblPlants:PGSC0003DMT400015320
PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR42898	PANTHER:PTHR42898:SF3	InterPro:SDR_fam
SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	TMHMM:TMhelix	UniParc:UPI0002953004	:	:

Description

Tropinone reductase II [Source:PGSC_GENE;Acc:PGSC0003DMG400005974]

Coordinates

chr4:-:1751233..1753943

Molecular Weight (calculated)

28396.0 Da

IEP (calculated)

5.379

GRAVY (calculated)

0.036

Length

261 amino acids

Sequence
(BLAST)

001: MAAGRWNLEG CTALVTGGSR GIGYGIVEEL ASLGASVYTC SRNQKELNEC LTQWRSKGFK VEASVCDLSS RSEREEFIKT VANHFDGKLN ILVNNAGIVI
101: YKEAKDYTME DYSLIMSINF EAAYHLSVLA HPFLKASQRG NVVFISSISG ASALPYEAVY GATKGAMDQL TRCLAFEWAK DNIRVNGVAP GVIASSMVEM
201: TIQDPEQKEN LDKLIDRCAL HRMGEPKELA AVVAFLCFPA ASYVTGQIIY VDGGFMANGG F

Best Arabidopsis Sequence Match ( AT1G07440.1 )
(BLAST)

001: MAGAEQSQRW SLKAKTVLVT GGTKGIGHAI VEEFAGFGAV IHTCARNEYE LNECLSKWQK KGFQVTGSVC DASLRPEREK LMQTVSSMFG GKLDILINNL
101: GAIRSKPTLD YTAEDFSFHI STNLESAYHL SQLAHPLLKA SGCGNIIFMS SIAGVVSASV GSIYSATKGA LNQLARNLAC EWASDGIRAN AVAPAVIATP
201: LAEAVYDDEF KKVVISRKPL GRFGEPEEVS SLVAFLCMPA ASYITGQTIC VDGGLTVNGF SYQPQG

Arabidopsis Description

Tropinone reductase homolog At1g07440 [Source:UniProtKB/Swiss-Prot;Acc:P0DKI3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.