Factsheet for PGSC0003DMT400073652

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 3
peroxisome 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g098850.2.1	Tomato	extracellular	98.98	85.29
AT3G05260.1	Thale cress	cytosol	74.06	75.09
CDY27781	Canola	cytosol, peroxisome, plastid	73.38	74.39
KRG96884	Soybean	cytosol	73.38	72.88
GSMUA_Achr4P24690_001	Banana	cytosol	73.04	71.81
KRH68573	Soybean	cytosol	66.89	71.27
KRH68572	Soybean	cytosol	72.01	70.33
GSMUA_Achr4P29030_001	Banana	cytosol	65.19	65.41
VIT_14s0128g00340.t01	Wine grape	plastid	75.77	65.1
OQU77380	Sorghum	mitochondrion	66.55	59.63
TraesCS1D01G084900.1	Wheat	mitochondrion, plastid	69.97	59.08
TraesCS1A01G083800.1	Wheat	plastid	69.97	59.08
TraesCS1B01G101100.1	Wheat	plastid	69.28	58.33
CDY05152	Canola	cytosol	47.1	57.74
Os05t0140800-01	Rice	plastid	70.99	56.99
Zm00001d006796_P001	Maize	extracellular	67.92	55.59
HORVU1Hr1G018140.5	Barley	extracellular, mitochondrion	69.62	51.13
PGSC0003DMT400053141	Potato	mitochondrion, peroxisome, plastid	27.3	30.42
PGSC0003DMT400043159	Potato	mitochondrion	27.65	30.11
PGSC0003DMT400022974	Potato	peroxisome	27.3	29.63
PGSC0003DMT400072533	Potato	peroxisome	26.28	29.17
PGSC0003DMT400049413	Potato	endoplasmic reticulum, peroxisome, plastid	27.3	28.67
PGSC0003DMT400015320	Potato	peroxisome	24.57	27.59
PGSC0003DMT400043152	Potato	peroxisome	25.94	27.44
PGSC0003DMT400034518	Potato	peroxisome	22.18	25.59
PGSC0003DMT400056868	Potato	cytosol, peroxisome, plastid	13.65	23.39
PGSC0003DMT400022973	Potato	peroxisome	26.96	21.24

Protein Annotations

EnsemblPlants:PGSC0003DMT400073652	EnsemblPlantsGene:PGSC0003DMG400028608	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	InterPro:Sc_DH/Rdtase_CS
PANTHER:PTHR43348	PANTHER:PTHR43348:SF4	PFAM:PF13561	PGSC:PGSC0003DMG400028608	PRINTS:PR00080	PRINTS:PR00081
ScanProsite:PS00061	SUPFAM:SSF51735	UniParc:UPI0002962BEA	UniProt:M1CSE2	MapMan:35.1	:

Description

Short chain dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400028608]

Coordinates

chr1:-:76481146..76482579

Molecular Weight (calculated)

31836.8 Da

IEP (calculated)

6.514

GRAVY (calculated)

-0.290

Length

293 amino acids

Sequence
(BLAST)

001: MASGGQTFPP QKQETQPGKE HAMDPTPHYS SQDYKPANKL RGKIALVTGG DSGIGRAVCH CFALEGATVA FTYVKSQEEK DAQDTLKLLM QAKAADAKDP
101: MAVPTDLGFD DNCKRVVDEV VNSYGRIDIL VNNAAEQYEA SSVEEINEER LERVFRTNIF SYFFVTRHAL KHMKEGSSII NTTSVNAYKG NAKLLDYTAT
201: KGAIVSFTRG LALQLVERGI RVNGVAPGPV WTPLIPASFS EEECANFGKQ VPMKRAAQPI EVAPSYVFLA SCPESSYITG QVIHPNGGTI VNA

Best Arabidopsis Sequence Match ( AT1G54870.2 )
(BLAST)

001: MAMNVLCRVF TSSRVLSSNV TFSFSQIPNN TKKPLLEKRR LSPRVCLRAM ASEKQKQHAQ PGKEHVMESS PQFSSSDYQP SNKLRGKVAL ITGGDSGIGR
101: AVGYCFASEG ATVAFTYVKG QEEKDAQETL QMLKEVKTSD SKEPIAIPTD LGFDENCKRV VDEVVNAFGR IDVLINNAAE QYESSTIEEI DEPRLERVFR
201: TNIFSYFFLT RHALKHMKEG SSIINTTSVN AYKGNASLLD YTATKGAIVA FTRGLALQLA EKGIRVNGVA PGPIWTPLIP ASFNEEKIKN FGSEVPMKRA
301: GQPIEVAPSY VFLACNHCSS YFTGQVLHPN GGAVVNA

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:TAIR;Acc:AT1G54870]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.