Factsheet for Zm00001d019439_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

peroxisome 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	peroxisome, secretory
MultiLoc:	peroxisome
PProwler:	peroxisome
TargetP:	secretory
WoLF PSORT:	peroxisome
YLoc:	peroxisome

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER98384	Sorghum	peroxisome	95.26	95.26
TraesCS5A01G164400.1	Wheat	peroxisome	88.93	88.93
TraesCS5D01G169300.1	Wheat	peroxisome	88.93	88.93
HORVU0Hr1G012410.1	Barley	peroxisome	88.54	88.54
TraesCS5B01G161900.1	Wheat	peroxisome	87.75	87.75
Os09t0133200-01	Rice	peroxisome	83.0	83.0
Zm00001d038897_P001	Maize	peroxisome	90.12	81.72
KRH02005	Soybean	endoplasmic reticulum, nucleus	73.91	74.21
CDY35231	Canola	peroxisome	35.57	72.58
CDY16690	Canola	peroxisome	71.54	70.98
CDX94534	Canola	peroxisome	71.54	70.98
Bra029476.1-P	Field mustard	peroxisome	71.54	70.98
AT4G05530.1	Thale cress	peroxisome	69.57	69.29
GSMUA_Achr3P01040_001	Banana	cytosol	26.09	68.75
Solyc04g014670.2.1	Tomato	plastid	67.59	67.59
PGSC0003DMT400034518	Potato	peroxisome	67.19	66.93
CDY27447	Canola	cytosol, mitochondrion, peroxisome	67.59	66.28
CDX76382	Canola	cytosol, mitochondrion, peroxisome	67.19	66.15
Bra020854.1-P	Field mustard	cytosol, mitochondrion, peroxisome	66.8	65.76
KRH36525	Soybean	endoplasmic reticulum	65.22	64.71
HORVU5Hr1G049670.1	Barley	peroxisome	64.43	64.43
KRH11511	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	64.82	64.31
GSMUA_Achr3P01030_001	Banana	mitochondrion	54.55	62.44
KRH70902	Soybean	cytosol	24.11	55.45
Zm00001d028575_P001	Maize	extracellular	35.18	32.6
Zm00001d048723_P001	Maize	mitochondrion	33.6	32.2
Zm00001d007687_P001	Maize	extracellular	32.02	30.8
Zm00001d011930_P001	Maize	mitochondrion, plastid	32.81	29.64
Zm00001d048726_P001	Maize	cytosol	25.69	29.02
Zm00001d026290_P001	Maize	peroxisome	31.23	26.51
Zm00001d002332_P026	Maize	peroxisome	29.25	24.92
Zm00001d006796_P001	Maize	extracellular	28.06	19.83
VIT_00s0516g00030.t01	Wine grape	cytosol, peroxisome	66.01	16.23

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	UniProt:A0A1D6HXF7	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	ProteinID:ONM52903.1	PFAM:PF13561
PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR43943	PANTHER:PTHR43943:SF2	InterPro:SDR_fam
SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI0001AE618C	EnsemblPlantsGene:Zm00001d019439	EnsemblPlants:Zm00001d019439_P001	EnsemblPlants:Zm00001d019439_T001
SEG:seg	:	:	:	:	:

Description

Dehydrogenase/reductase SDR family member 2

Coordinates

chr7:-:33871968..33879629

Molecular Weight (calculated)

26782.6 Da

IEP (calculated)

8.475

GRAVY (calculated)

0.169

Length

253 amino acids

Sequence
(BLAST)

001: MDVKCRRLEG KVAIVTASTM GIGLAIAERL GLEGAAVVIS SRKQKNVNEA VEGLRAKGIT AVGAVCHVSD AQQRKSLIET AVKSFGHIDI LVSNAAANPS
101: VDSILEMKES VLDKLWDINV KASILLIQDA APHLRKGSSV IIISSIAGYN PEQGLTMYGV TKTALFGLTK ALAGEMGPDT RVNCIAPGFV PTRFASFLTE
201: NETIRKELNE RTKLKRLGTV EDMAAAAAFL ASDDASYITA ETIVVAGGVQ SRL

Best Arabidopsis Sequence Match ( AT4G05530.1 )
(BLAST)

001: MEKKLPRRLE GKVAIVTAST QGIGFGITER FGLEGASVVV SSRKQANVDE AVAKLKSKGI DAYGIVCHVS NAQHRRNLVE KTVQKYGKID IVVCNAAANP
101: STDPILSSKE AVLDKLWEIN VKSSILLLQD MAPHLEKGSS VIFITSIAGF SPQGAMAMYG VTKTALLGLT KALAAEMAPD TRVNAVAPGF VPTHFASFIT
201: GSSEVREGIE EKTLLNRLGT TGDMAAAAAF LASDDSSYIT GETLVVAGGM PSRL

Arabidopsis Description

SDRAShort-chain dehydrogenase/reductase SDRA [Source:UniProtKB/Swiss-Prot;Acc:Q9S9W2]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.