Factsheet for GSMUA_Achr10P13740_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P04570_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06060.1	GSMUA_Achr5P04570_001	AT2G29330.1	21798944
AT5G06060.1	GSMUA_Achr5P04570_001	AT2G29360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G060350.3	Barley	plastid	73.8	73.53
VIT_13s0019g02180.t01	Wine grape	peroxisome, plasma membrane, plastid	72.32	73.13
TraesCS4B01G210000.1	Wheat	plastid	72.69	72.43
TraesCS4A01G094400.1	Wheat	plastid	72.69	72.43
TraesCS4D01G210800.1	Wheat	plastid	72.32	72.06
Solyc03g096640.2.1	Tomato	mitochondrion, plastid	71.22	72.01
PGSC0003DMT400043159	Potato	mitochondrion	71.22	71.75
Os03t0268900-02	Rice	plastid	71.22	71.48
TraesCS4B01G209900.1	Wheat	peroxisome	71.22	71.48
TraesCS4A01G094500.1	Wheat	cytosol, peroxisome, plastid	70.85	70.85
CDY04977	Canola	peroxisome	68.63	70.72
AT5G06060.1	Thale cress	peroxisome	68.63	70.45
CDY14094	Canola	peroxisome	67.53	69.58
Bra028744.1-P	Field mustard	cytosol	67.53	69.58
Os03t0269000-01	Rice	plastid	54.61	69.48
CDX98899	Canola	peroxisome	66.79	69.08
Zm00001d028575_P001	Maize	extracellular	68.27	67.77
KRH31026	Soybean	cytosol, mitochondrion, peroxisome, plastid	67.16	66.91
KRH31007	Soybean	mitochondrion	66.42	66.42
KRG97856	Soybean	mitochondrion, plastid	66.42	66.18
CDY04975	Canola	mitochondrion	27.31	66.07
VIT_13s0019g02140.t01	Wine grape	peroxisome	66.05	66.05
VIT_13s0019g02130.t01	Wine grape	peroxisome	64.94	65.67
KRH31025	Soybean	plastid	66.42	64.98
CDX70101	Canola	peroxisome	62.73	64.89
Bra009159.1-P	Field mustard	cytosol, mitochondrion, peroxisome, plasma membrane	62.36	64.5
Os03t0269100-02	Rice	mitochondrion, plastid	71.22	62.66
PGSC0003DMT400043152	Potato	peroxisome	63.84	62.45
KRG97870	Soybean	mitochondrion	57.56	62.4
Solyc03g096660.1.1	Tomato	extracellular	44.28	61.54
TraesCS4D01G210700.1	Wheat	plastid	71.22	60.88
VIT_13s0019g02170.t01	Wine grape	mitochondrion, nucleus, peroxisome, plastid	63.84	60.7
KRG97857	Soybean	mitochondrion	55.72	60.4
EES08074	Sorghum	plastid	65.68	59.14
OQU92858	Sorghum	cytosol, peroxisome, plastid	67.16	59.09
KRH31021	Soybean	mitochondrion	64.58	57.76
GSMUA_Achr9P03470_001	Banana	cytosol	57.2	57.62
HORVU4Hr1G060330.1	Barley	mitochondrion	67.9	57.5
GSMUA_Achr11P...	Banana	cytosol	56.09	56.72
GSMUA_Achr9P03430_001	Banana	cytosol, mitochondrion, plastid	53.87	55.73
GSMUA_Achr9P03440_001	Banana	cytosol	52.03	52.03
GSMUA_Achr5P04570_001	Banana	cytosol	24.35	51.97
CDX98898	Canola	cytosol, peroxisome, plasma membrane	57.56	50.32
GSMUA_Achr9P03420_001	Banana	mitochondrion	52.4	47.18
OQU91956	Sorghum	extracellular, peroxisome	54.24	45.94
GSMUA_Achr5P04560_001	Banana	cytosol	57.56	45.22
GSMUA_Achr6P34030_001	Banana	cytosol	54.61	40.88
GSMUA_Achr3P01040_001	Banana	cytosol	11.81	33.33
GSMUA_Achr9P03450_001	Banana	cytosol, nucleus, peroxisome	56.83	32.7
GSMUA_Achr10P...	Banana	cytosol	56.46	28.39
GSMUA_Achr3P01030_001	Banana	mitochondrion	22.14	27.15
GSMUA_Achr1P18200_001	Banana	cytosol	16.61	25.86
GSMUA_Achr2P01480_001	Banana	peroxisome	27.31	24.92
GSMUA_Achr3P23590_001	Banana	peroxisome	26.57	24.24
GSMUA_Achr4P24690_001	Banana	cytosol	25.46	23.15
GSMUA_Achr4P29030_001	Banana	cytosol	24.35	22.6

Protein Annotations

Gene3D:3.40.50.720	MapMan:50.1.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr10G13740_001	EnsemblPlants:GSMUA_Achr10P13740_001	EnsemblPlants:GSMUA_Achr10T13740_001
UniProt:M0RI00	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061
PANTHER:PTHR42898	PANTHER:PTHR42898:SF3	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	TMHMM:TMhelix
UniParc:UPI00029630AA	SEG:seg	:	:	:	:

Description

Tropinone reductase homolog [Source:GMGC_GENE;Acc:GSMUA_Achr10G13740_001]

Coordinates

chr10:+:22245450..22248865

Molecular Weight (calculated)

28820.5 Da

IEP (calculated)

7.835

GRAVY (calculated)

0.003

Length

271 amino acids

Sequence
(BLAST)

001: MGDAAGSSSG HATARWSLGG MTALVTGGTR GIGHAVVEEL AGLGASVHTC SRKEADLTEC LRKWAAKGFR VTGSVCDLSS REQRDQLIRE VSATFNGKLN
101: ILVNNVGTNI RKPTVEYSAE EYSFLMATNL ESAYHLCQLA HPLLKASGMG SIVFISSVAG VVALSSGSIY AAAKAAMNQM TKNLACEWAK DNIRTNSVSP
201: WYIKTKLVEH LLNDKDSLQR IIDRTPLGRV GEPEEVSSLV GYLCLPAASY ITGQIISVDG GMTVNGFYPS G

Best Arabidopsis Sequence Match ( AT5G06060.1 )
(BLAST)

001: METDKRWSLA GKTALVTGGT RGIGRAVVEE LAKFGAKVHT CSRNQEELNA CLNDWKANGL VVSGSVCDAS VRDQREKLIQ EASSAFSGKL NILINNVGTN
101: VRKPTVEYSS EEYAKIMSTN LESAFHLSQI AHPLLKASGV GSIVFISSVA GLVHLSSGSI YGATKGALNQ LTRNLACEWA SDNIRTNCVA PWYIKTSLVE
201: TLLEKKEFVE AVVSRTPLGR VGEPEEVSSL VAFLCLPASS YITGQVISVD GGFTVNGFSY AMKP

Arabidopsis Description

Tropinone reductase homolog At5g06060 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHT0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.