CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10294
KRH23029
KRH24731
KRH24732
KRH24733
KRH24840
KRH29740
KRH29844

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06060.1	KRH24731	AT2G29330.1	21798944
AT5G06060.1	KRH24732	AT2G29330.1	21798944
AT5G06060.1	KRH24733	AT2G29330.1	21798944
AT5G06060.1	KRH29740	AT2G29330.1	21798944
AT5G06060.1	KRH24731	AT2G29360.1	21798944
AT5G06060.1	KRH24732	AT2G29360.1	21798944
AT5G06060.1	KRH24733	AT2G29360.1	21798944
AT5G06060.1	KRH29740	AT2G29360.1	21798944
AT5G06060.1	KRH10294	AT3G46090.1	17259181
AT5G06060.1	KRH23029	AT3G46090.1	17259181
AT5G06060.1	KRH24840	AT3G46090.1	17259181
AT5G06060.1	KRH29844	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31007	Soybean	mitochondrion	84.8	78.23
KRG97856	Soybean	mitochondrion, plastid	66.8	61.4
KRH31026	Soybean	cytosol, mitochondrion, peroxisome, plastid	64.8	59.56
KRH31025	Soybean	plastid	64.8	58.48
CDY04975	Canola	mitochondrion	26.0	58.04
GSMUA_Achr10P...	Banana	cytosol	62.4	57.56
VIT_13s0019g02180.t01	Wine grape	peroxisome, plasma membrane, plastid	61.2	57.09
PGSC0003DMT400043159	Potato	mitochondrion	61.2	56.88
AT5G06060.1	Thale cress	peroxisome	60.0	56.82
Solyc03g096640.2.1	Tomato	mitochondrion, plastid	60.8	56.72
Bra028744.1-P	Field mustard	cytosol	59.6	56.65
CDY04977	Canola	peroxisome	59.6	56.65
HORVU4Hr1G060350.3	Barley	plastid	61.6	56.62
TraesCS4A01G094400.1	Wheat	plastid	61.6	56.62
Os03t0268900-02	Rice	plastid	60.8	56.3
TraesCS4B01G210000.1	Wheat	plastid	61.2	56.25
TraesCS4D01G210800.1	Wheat	plastid	61.2	56.25
CDY14094	Canola	peroxisome	58.8	55.89
CDX98899	Canola	peroxisome	58.4	55.73
KRH24734	Soybean	extracellular, plasma membrane, vacuole	25.2	55.26
CDX70101	Canola	peroxisome	57.6	54.96
TraesCS4A01G094500.1	Wheat	cytosol, peroxisome, plastid	59.2	54.61
VIT_13s0019g02140.t01	Wine grape	peroxisome	59.2	54.61
Bra009159.1-P	Field mustard	cytosol, mitochondrion, peroxisome, plasma membrane	57.2	54.58
Os03t0269000-01	Rice	plastid	46.4	54.46
Zm00001d028575_P001	Maize	extracellular	59.2	54.21
VIT_13s0019g02130.t01	Wine grape	peroxisome	58.0	54.1
TraesCS4B01G209900.1	Wheat	peroxisome	58.4	54.07
KRH31021	Soybean	mitochondrion	63.2	52.15
Solyc03g096660.1.1	Tomato	extracellular	40.4	51.79
KRH24731	Soybean	nucleus	55.2	51.69
PGSC0003DMT400043152	Potato	peroxisome	56.4	50.9
KRH24733	Soybean	nucleus	53.2	50.19
KRG97857	Soybean	mitochondrion	50.0	50.0
KRH00026	Soybean	cytosol, mitochondrion, peroxisome	52.8	50.0
KRH24732	Soybean	cytosol, endoplasmic reticulum, plastid	51.6	47.96
EES08074	Sorghum	plastid	56.8	47.18
OQU92858	Sorghum	cytosol, peroxisome, plastid	58.0	47.08
VIT_13s0019g02170.t01	Wine grape	mitochondrion, nucleus, peroxisome, plastid	53.2	46.67
TraesCS4D01G210700.1	Wheat	plastid	58.8	46.37
KRH49153	Soybean	cytosol	49.2	46.24
Os03t0269100-02	Rice	mitochondrion, plastid	56.8	46.1
KRH00029	Soybean	peroxisome	18.0	45.92
KRH49151	Soybean	mitochondrion	48.4	45.66
KRH49156	Soybean	plastid	31.2	45.61
KRH29741	Soybean	plastid	55.6	45.28
KRH00030	Soybean	cytosol	48.0	45.11
HORVU4Hr1G060330.1	Barley	mitochondrion	54.8	42.81
CDX98898	Canola	cytosol, peroxisome, plasma membrane	52.4	42.26
KRH29740	Soybean	cytosol	16.0	40.82
KRH49152	Soybean	cytosol	48.0	40.68
KRH00032	Soybean	cytosol, peroxisome, plastid	28.0	38.89
OQU91956	Sorghum	extracellular, peroxisome	44.8	35.0
KRH02005	Soybean	endoplasmic reticulum, nucleus	26.8	26.59
KRH36525	Soybean	endoplasmic reticulum	26.4	25.88
KRH11511	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	26.0	25.49
KRG96884	Soybean	cytosol	26.4	22.37
KRH33956	Soybean	endoplasmic reticulum	26.0	22.18
KRG92837	Soybean	endoplasmic reticulum, nucleus	26.0	22.18
KRH68573	Soybean	cytosol	23.6	21.45
KRH70902	Soybean	cytosol	9.2	20.91
KRH51046	Soybean	cytosol, peroxisome, plastid	26.0	20.38
KRH68572	Soybean	cytosol	24.4	20.33
KRH44885	Soybean	nucleus	23.2	19.46
KRH68615	Soybean	cytosol, nucleus, plastid	17.2	19.46
KRH13054	Soybean	nucleus	22.4	18.79

Protein Annotations

EMBL:ACUP02010821	EnsemblPlants:KRG97870	EnsemblPlantsGene:GLYMA_18G036100	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR42898	PANTHER:PTHR42898:SF3	PFAM:PF13561	PRINTS:PR00081	ProteinID:KRG97870	ProteinID:KRG97870.1
SUPFAM:SSF51735	UniParc:UPI0006ED5334	UniProt:A0A0R0F6P0	MapMan:50.1.1	:	:

Description

hypothetical protein

Coordinates

chr18:+:2813452..2816655

Molecular Weight (calculated)

27640.8 Da

IEP (calculated)

7.952

GRAVY (calculated)

-0.202

Length

250 amino acids

Sequence
(BLAST)

001: MANPEGSSRG SRWSLKGTNA LVTGGTRGIG HAVVEELAEF GATVYTCSRN ESELNACLKE WSRRDFRFLG WFVMRLLHPK ERNSFSKWQL PSTVNNVGTN
101: VRKPTIEYTA EEYSKLMATN LDSAYHLSQL AYPLLKASGN GSIVFISSVE AAIDQLTKYL ACEWAKDNIR SNSVAPWYTL TSLEEPLLAN KQLVNEITSQ
201: TPIKRMAETH EVSSLVTFLC LPAASYITGQ IVSVDGGFTA NGFQPSMRIS

Best Arabidopsis Sequence Match ( AT1G07450.1 )
(BLAST)

001: MDINRWSLQG MTALVTGGSK GIGYAIVEEL VGFGARVHIC DIDETLLNEC LSGWHAKGFE VSGSICDVSS RPQRVQLMQT VSSLFGAKLN ILINNVGKYI
101: LKPTLESTAE DFSSLMATNL ESAYYISQLA HPLLKASGNG NIVFISSVTG VVSGTSTIYG VTKGALNQLA RDLACEWASD NIRANSVAPW VTATSLVQKY
201: LEDEIFAEAM FSRTPLGRAC EPREVASLVT FLCLPAASYI TGQTICIDGG FTVNGFSYKP

Arabidopsis Description

Tropinone reductase homolog At1g07450 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX32]
SUBAcon: [cytosol,nucleus,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.