CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY40183
CDY45434

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06060.1	CDY40183	AT2G29330.1	21798944
AT5G06060.1	CDY45434	AT2G29330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16436	Canola	endoplasmic reticulum, vacuole	49.11	52.38
CDY14094	Canola	peroxisome	89.29	38.02
CDY04977	Canola	peroxisome	88.39	37.64
Solyc03g096660.1.1	Tomato	extracellular	63.39	36.41
AT5G06060.1	Thale cress	peroxisome	83.04	35.23
CDX98899	Canola	peroxisome	81.25	34.73
CDY40186	Canola	cytosol	59.82	32.37
CDX70101	Canola	peroxisome	74.11	31.68
CDY35991	Canola	plastid	33.93	30.65
CDY45441	Canola	cytosol	59.82	29.91
VIT_13s0019g02180.t01	Wine grape	peroxisome, plasma membrane, plastid	70.54	29.48
PGSC0003DMT400043159	Potato	mitochondrion	68.75	28.62
Solyc03g096640.2.1	Tomato	mitochondrion, plastid	67.86	28.36
CDX97897	Canola	cytosol, extracellular	58.04	28.14
GSMUA_Achr10P...	Banana	cytosol	66.07	27.31
HORVU4Hr1G060350.3	Barley	plastid	66.07	27.21
CDX86486	Canola	cytosol, peroxisome, plastid	63.39	27.1
CDY06260	Canola	plastid	63.39	27.1
CDY09917	Canola	cytosol	63.39	27.1
CDY68057	Canola	cytosol	63.39	27.1
TraesCS4A01G094400.1	Wheat	plastid	65.18	26.84
TraesCS4D01G210800.1	Wheat	plastid	65.18	26.84
CDY31768	Canola	cytosol, peroxisome, plastid	62.5	26.72
TraesCS4A01G094500.1	Wheat	cytosol, peroxisome, plastid	64.29	26.57
CDY40183	Canola	plastid	61.61	26.34
CDY40188	Canola	cytosol, peroxisome, plasma membrane	61.61	26.34
CDY45432	Canola	cytosol	61.61	26.34
CDY45434	Canola	cytosol, nucleus, plastid	61.61	26.34
TraesCS4B01G210000.1	Wheat	plastid	63.39	26.1
KRG97870	Soybean	mitochondrion	58.04	26.0
PGSC0003DMT400043152	Potato	peroxisome	64.29	25.99
CDX86485	Canola	cytosol, peroxisome, plastid	60.71	25.95
CDY45435	Canola	cytosol, peroxisome, plastid	60.71	25.95
CDY10276	Canola	mitochondrion	61.61	25.94
CDY14610	Canola	mitochondrion	61.61	25.94
TraesCS4B01G209900.1	Wheat	peroxisome	62.5	25.93
CDX98898	Canola	cytosol, peroxisome, plasma membrane	71.43	25.81
KRG97856	Soybean	mitochondrion, plastid	62.5	25.74
Zm00001d028575_P001	Maize	extracellular	62.5	25.64
CDX83307	Canola	peroxisome	59.82	25.57
CDX95751	Canola	peroxisome	59.82	25.57
CDY40182	Canola	cytosol, peroxisome, plastid	59.82	25.57
CDY06706	Canola	mitochondrion	60.71	25.56
Os03t0268900-02	Rice	plastid	61.61	25.56
VIT_13s0019g02130.t01	Wine grape	peroxisome	60.71	25.37
CDY40179	Canola	cytosol, peroxisome, plastid	58.93	25.29
KRH31025	Soybean	plastid	62.5	25.27
CDX83306	Canola	plastid	58.93	25.19
CDX97899	Canola	peroxisome	58.93	25.19
CDY31773	Canola	plastid	58.93	25.19
CDY40165	Canola	plastid	58.93	25.19
CDY40175	Canola	plasma membrane	58.93	25.19
CDY45438	Canola	cytosol	58.93	25.19
CDX95750	Canola	cytosol	61.61	25.18
CDY62820	Canola	cytosol, endoplasmic reticulum, peroxisome	58.93	25.1
KRH31007	Soybean	mitochondrion	60.71	25.09
CDY35231	Canola	peroxisome	27.68	25.0
KRH31026	Soybean	cytosol, mitochondrion, peroxisome, plastid	60.71	25.0
CDY52942	Canola	mitochondrion	58.93	24.81
CDY31772	Canola	cytosol, peroxisome, plastid	58.04	24.81
CDX95752	Canola	cytosol	52.68	24.79
VIT_13s0019g02140.t01	Wine grape	peroxisome	59.82	24.72
CDX95753	Canola	cytosol, peroxisome, plastid	57.14	24.43
CDY16437	Canola	mitochondrion	57.14	24.06
CDY40185	Canola	plastid	56.25	24.05
Os03t0269100-02	Rice	mitochondrion, plastid	63.39	23.05
CDY51372	Canola	plastid	57.14	22.94
CDX97893	Canola	mitochondrion	55.36	22.88
CDY09824	Canola	mitochondrion	55.36	22.88
CDY31776	Canola	cytosol, peroxisome, plastid	55.36	22.88
HORVU4Hr1G060330.1	Barley	mitochondrion	65.18	22.81
TraesCS4D01G210700.1	Wheat	plastid	64.29	22.71
CDY09823	Canola	peroxisome	54.46	22.51
EES08074	Sorghum	plastid	59.82	22.26
KRH31021	Soybean	mitochondrion	59.82	22.11
OQU92858	Sorghum	cytosol, peroxisome, plastid	59.82	21.75
CDY45433	Canola	cytosol	46.43	21.22
CDX97895	Canola	cytosol	41.07	19.57
CDY31774	Canola	cytosol	41.07	19.57
CDX97890	Canola	cytosol	56.25	18.58
VIT_13s0019g02170.t01	Wine grape	mitochondrion, nucleus, peroxisome, plastid	46.43	18.25
KRG97857	Soybean	mitochondrion	38.39	17.2
CDY40177	Canola	cytosol	41.96	16.97
OQU91956	Sorghum	extracellular, peroxisome	47.32	16.56
CDY65683	Canola	cytosol, mitochondrion	55.36	15.54
CDY31770	Canola	plastid	31.25	15.09
CDY40171	Canola	cytosol	28.57	14.48
CDY05152	Canola	cytosol	27.68	12.97
CDY16690	Canola	peroxisome	29.46	12.94
CDX94534	Canola	peroxisome	28.57	12.55
CDY27447	Canola	cytosol, mitochondrion, peroxisome	28.57	12.4
CDY43488	Canola	cytosol	31.25	12.11
CDX76382	Canola	cytosol, mitochondrion, peroxisome	27.68	12.06
CDY31767	Canola	plastid	59.82	11.9
Os03t0269000-01	Rice	plastid	22.32	11.74
CDY17559	Canola	cytoskeleton, nucleus, peroxisome	28.57	11.15
CDY27781	Canola	cytosol, peroxisome, plastid	28.57	11.07
CDX73802	Canola	peroxisome	28.57	10.74
CDY00799	Canola	peroxisome	28.57	10.74
CDY08402	Canola	cytosol	25.89	9.86
CDY50145	Canola	plastid	62.5	9.67
CDY72061	Canola	cytosol	3.57	3.67
CDY64214	Canola	mitochondrion	4.46	2.92
CDY05153	Canola	cytosol, nucleus, plastid	1.79	2.86

Protein Annotations

EnsemblPlants:CDY04975	EnsemblPlantsGene:GSBRNA2T00119705001	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	ncoils:Coil
PANTHER:PTHR42898	PANTHER:PTHR42898:SF7	PFAM:PF13561	PRINTS:PR00081	ProteinID:CDY04975	ProteinID:CDY04975.1
SUPFAM:SSF51735	UniParc:UPI0004EEA0D8	MapMan:35.1	:	:	:

Description

BnaAnng01570D

Coordinates

chrLK031958:-:892152..892850

Molecular Weight (calculated)

12343.1 Da

IEP (calculated)

8.875

GRAVY (calculated)

0.185

Length

112 amino acids

Sequence
(BLAST)

001: MTRLAIIHKQ IKTLIRALNQ LTRNLACEWA GDNIRTNCVA PWYIKTSLVK PLLEKKGFEE AIVSRTPLGR VGEPEEVSSL VAFLCLPAAS YITGQVISVD
101: GGFTVNGFSY TM

Best Arabidopsis Sequence Match ( AT5G06060.1 )
(BLAST)

001: METDKRWSLA GKTALVTGGT RGIGRAVVEE LAKFGAKVHT CSRNQEELNA CLNDWKANGL VVSGSVCDAS VRDQREKLIQ EASSAFSGKL NILINNVGTN
101: VRKPTVEYSS EEYAKIMSTN LESAFHLSQI AHPLLKASGV GSIVFISSVA GLVHLSSGSI YGATKGALNQ LTRNLACEWA SDNIRTNCVA PWYIKTSLVE
201: TLLEKKEFVE AVVSRTPLGR VGEPEEVSSL VAFLCLPASS YITGQVISVD GGFTVNGFSY AMKP

Arabidopsis Description

Tropinone reductase homolog At5g06060 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHT0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.