Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 4
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDX95752 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G07440.1 | CDX95752 | AT2G29310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10276 | Canola | mitochondrion | 100.0 | 100.0 |
| CDY06706 | Canola | mitochondrion | 96.99 | 96.99 |
| AT1G07440.1 | Thale cress | mitochondrion | 83.83 | 83.83 |
| CDY16437 | Canola | mitochondrion | 80.08 | 80.08 |
| CDY52942 | Canola | mitochondrion | 78.2 | 78.2 |
| CDY64214 | Canola | mitochondrion | 50.0 | 77.78 |
| CDY16436 | Canola | endoplasmic reticulum, vacuole | 28.2 | 71.43 |
| CDY45434 | Canola | cytosol, nucleus, plastid | 69.55 | 70.61 |
| CDY40188 | Canola | cytosol, peroxisome, plasma membrane | 69.17 | 70.23 |
| CDY45432 | Canola | cytosol | 69.17 | 70.23 |
| CDY40183 | Canola | plastid | 68.8 | 69.85 |
| CDX86485 | Canola | cytosol, peroxisome, plastid | 68.42 | 69.47 |
| CDY68057 | Canola | cytosol | 68.42 | 69.47 |
| CDY45438 | Canola | cytosol | 68.05 | 69.08 |
| CDY40179 | Canola | cytosol, peroxisome, plastid | 67.67 | 68.97 |
| CDX86486 | Canola | cytosol, peroxisome, plastid | 67.67 | 68.7 |
| CDY31768 | Canola | cytosol, peroxisome, plastid | 67.67 | 68.7 |
| CDY40175 | Canola | plasma membrane | 67.67 | 68.7 |
| CDY31772 | Canola | cytosol, peroxisome, plastid | 67.29 | 68.32 |
| CDY40185 | Canola | plastid | 66.92 | 67.94 |
| CDY09917 | Canola | cytosol | 66.92 | 67.94 |
| CDY45441 | Canola | cytosol | 57.14 | 67.86 |
| CDX83307 | Canola | peroxisome | 66.54 | 67.56 |
| CDX97899 | Canola | peroxisome | 66.54 | 67.56 |
| CDY40182 | Canola | cytosol, peroxisome, plastid | 66.17 | 67.18 |
| CDY06260 | Canola | plastid | 66.17 | 67.18 |
| CDY31773 | Canola | plastid | 66.17 | 67.18 |
| CDY45435 | Canola | cytosol, peroxisome, plastid | 66.17 | 67.18 |
| CDY40186 | Canola | cytosol | 52.26 | 67.15 |
| CDY62820 | Canola | cytosol, endoplasmic reticulum, peroxisome | 65.79 | 66.54 |
| CDX95751 | Canola | peroxisome | 65.41 | 66.41 |
| CDY40171 | Canola | cytosol | 54.89 | 66.06 |
| CDX83306 | Canola | plastid | 65.04 | 66.03 |
| CDY40165 | Canola | plastid | 65.04 | 66.03 |
| CDX97895 | Canola | cytosol | 58.27 | 65.96 |
| CDY31774 | Canola | cytosol | 58.27 | 65.96 |
| CDX97897 | Canola | cytosol, extracellular | 57.14 | 65.8 |
| CDX95753 | Canola | cytosol, peroxisome, plastid | 64.29 | 65.27 |
| VIT_06s0004g05320.t01 | Wine grape | endoplasmic reticulum, peroxisome, plastid | 61.28 | 64.68 |
| VIT_06s0004g05440.t01 | Wine grape | cytosol | 19.92 | 64.63 |
| CDY09824 | Canola | mitochondrion | 65.79 | 64.58 |
| CDX97893 | Canola | mitochondrion | 65.79 | 64.58 |
| CDY09823 | Canola | peroxisome | 65.79 | 64.58 |
| CDY45433 | Canola | cytosol | 59.02 | 64.08 |
| Solyc03g096650.1.1 | Tomato | cytosol | 21.43 | 64.04 |
| CDY31776 | Canola | cytosol, peroxisome, plastid | 65.04 | 63.84 |
| CDY04977 | Canola | peroxisome | 62.78 | 63.5 |
| CDY14094 | Canola | peroxisome | 62.78 | 63.5 |
| VIT_06s0004g05370.t01 | Wine grape | peroxisome | 60.15 | 63.49 |
| VIT_06s0004g05400.t01 | Wine grape | cytosol | 26.32 | 63.06 |
| CDX98899 | Canola | peroxisome | 62.03 | 62.98 |
| VIT_06s0004g05310.t01 | Wine grape | cytosol | 26.69 | 62.83 |
| VIT_06s0004g05380.t01 | Wine grape | plastid | 63.16 | 62.22 |
| CDX70101 | Canola | peroxisome | 60.9 | 61.83 |
| CDY04975 | Canola | mitochondrion | 25.94 | 61.61 |
| CDX95750 | Canola | cytosol | 63.16 | 61.31 |
| CDY31770 | Canola | plastid | 53.01 | 60.78 |
| VIT_06s0004g05430.t01 | Wine grape | mitochondrion, nucleus, peroxisome | 61.65 | 60.74 |
| KRH24731 | Soybean | nucleus | 60.53 | 60.3 |
| CDY51372 | Canola | plastid | 63.16 | 60.22 |
| VIT_06s0004g05330.t01 | Wine grape | peroxisome | 57.14 | 59.84 |
| CDY35991 | Canola | plastid | 27.82 | 59.68 |
| CDY72061 | Canola | cytosol | 24.44 | 59.63 |
| KRH24733 | Soybean | nucleus | 58.27 | 58.49 |
| CDX95752 | Canola | cytosol | 51.5 | 57.56 |
| VIT_06s0004g05360.t01 | Wine grape | cytosol, mitochondrion, plastid | 51.88 | 57.5 |
| KRH24732 | Soybean | cytosol, endoplasmic reticulum, plastid | 57.14 | 56.51 |
| CDY40177 | Canola | cytosol | 58.65 | 56.32 |
| VIT_06s0004g05450.t01 | Wine grape | plasma membrane | 36.47 | 53.89 |
| CDY65683 | Canola | cytosol, mitochondrion | 79.7 | 53.13 |
| VIT_06s0004g05390.t01 | Wine grape | cytosol, plasma membrane, plastid | 48.5 | 52.44 |
| KRH29740 | Soybean | cytosol | 19.17 | 52.04 |
| GSMUA_Achr5P04570_001 | Banana | cytosol | 24.81 | 51.97 |
| CDX98898 | Canola | cytosol, peroxisome, plasma membrane | 57.89 | 49.68 |
| CDX97890 | Canola | cytosol | 62.78 | 49.26 |
| CDY35231 | Canola | peroxisome | 15.79 | 33.87 |
| CDY31767 | Canola | plastid | 69.17 | 32.68 |
| CDX94534 | Canola | peroxisome | 29.7 | 30.98 |
| CDY16690 | Canola | peroxisome | 29.7 | 30.98 |
| CDY27447 | Canola | cytosol, mitochondrion, peroxisome | 29.32 | 30.23 |
| CDX76382 | Canola | cytosol, mitochondrion, peroxisome | 28.95 | 29.96 |
| CDY43488 | Canola | cytosol | 30.08 | 27.68 |
| CDY17559 | Canola | cytoskeleton, nucleus, peroxisome | 29.32 | 27.18 |
| CDY27781 | Canola | cytosol, peroxisome, plastid | 28.95 | 26.64 |
| CDY50145 | Canola | plastid | 67.67 | 24.86 |
| CDY05152 | Canola | cytosol | 21.43 | 23.85 |
| CDY00799 | Canola | peroxisome | 25.94 | 23.15 |
| CDX73802 | Canola | peroxisome | 25.94 | 23.15 |
| CDY08402 | Canola | cytosol | 25.56 | 23.13 |
| CDY05153 | Canola | cytosol, nucleus, plastid | 5.26 | 20.0 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:50.1.1 | GO:A0A078FA61 | UniProt:A0A078FA61 | ProteinID:CDY10276.1 | EnsemblPlants:CDY14610 |
| ProteinID:CDY14610 | ProteinID:CDY14610.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016491 | GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00084346001 | InterPro:NAD(P)-bd_dom_sf | PFAM:PF13561 | PRINTS:PR00080 |
| PRINTS:PR00081 | ScanProsite:PS00061 | PANTHER:PTHR42898 | PANTHER:PTHR42898:SF7 | InterPro:SDR_fam | SUPFAM:SSF51735 |
| InterPro:Sc_DH/Rdtase_CS | UniParc:UPI0004EEB72B | : | : | : | : |
Description
BnaC02g25030DBnaC02g25030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FA61]
Coordinates
chrLK032045:-:242774..244263
Molecular Weight (calculated)
28211.7 Da
IEP (calculated)
6.921
GRAVY (calculated)
0.070
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGAEQLQRW SLRAKTALVT GGTKGIGHAV VEELAGFGAI IHTCARDEPQ LNECISQWQK KGFHVTGSVC DVTSGTDREK LMQNVSSMFG GKLDILINNV
101: GAIRSKPTVE HTADDFSFHI STNLESAFHL SQLSHPLLKA SGCGSIVFMS SVAGVVSLSI SSIYCATKGA MNQLARNLAC EWASDGIRAN AVAPAVIATP
201: LAKAVYDDDF KKAVTSRKPL GRFGEPEEVA SLVAFLCMPA ASYITGQTIC VDGGLSVNGF SYQPHD
101: GAIRSKPTVE HTADDFSFHI STNLESAFHL SQLSHPLLKA SGCGSIVFMS SVAGVVSLSI SSIYCATKGA MNQLARNLAC EWASDGIRAN AVAPAVIATP
201: LAKAVYDDDF KKAVTSRKPL GRFGEPEEVA SLVAFLCMPA ASYITGQTIC VDGGLSVNGF SYQPHD
001: MAGAEQSQRW SLKAKTVLVT GGTKGIGHAI VEEFAGFGAV IHTCARNEYE LNECLSKWQK KGFQVTGSVC DASLRPEREK LMQTVSSMFG GKLDILINNL
101: GAIRSKPTLD YTAEDFSFHI STNLESAYHL SQLAHPLLKA SGCGNIIFMS SIAGVVSASV GSIYSATKGA LNQLARNLAC EWASDGIRAN AVAPAVIATP
201: LAEAVYDDEF KKVVISRKPL GRFGEPEEVS SLVAFLCMPA ASYITGQTIC VDGGLTVNGF SYQPQG
101: GAIRSKPTLD YTAEDFSFHI STNLESAYHL SQLAHPLLKA SGCGNIIFMS SIAGVVSASV GSIYSATKGA LNQLARNLAC EWASDGIRAN AVAPAVIATP
201: LAEAVYDDEF KKVVISRKPL GRFGEPEEVS SLVAFLCMPA ASYITGQTIC VDGGLTVNGF SYQPQG
Arabidopsis Description
Tropinone reductase homolog At1g07440 [Source:UniProtKB/Swiss-Prot;Acc:P0DKI3]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.