Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- cytosol 1
- peroxisome 2
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G29340.1 | CDY42827 | AT2G42580.1 | 19000166 |
| AT2G29340.1 | CDY51514 | AT2G42580.1 | 19000166 |
| AT2G29340.1 | CDY55390 | AT2G42580.1 | 19000166 |
| AT2G29340.1 | CDY61202 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31772 | Canola | cytosol, peroxisome, plastid | 94.66 | 94.66 |
| CDY31768 | Canola | cytosol, peroxisome, plastid | 86.64 | 86.64 |
| CDY31773 | Canola | plastid | 86.64 | 86.64 |
| CDX97897 | Canola | cytosol, extracellular | 75.95 | 86.15 |
| CDY40188 | Canola | cytosol, peroxisome, plasma membrane | 83.21 | 83.21 |
| CDY45432 | Canola | cytosol | 83.21 | 83.21 |
| CDX83307 | Canola | peroxisome | 82.44 | 82.44 |
| CDY40186 | Canola | cytosol | 64.89 | 82.13 |
| CDX95751 | Canola | peroxisome | 81.3 | 81.3 |
| CDX83306 | Canola | plastid | 81.3 | 81.3 |
| CDY40182 | Canola | cytosol, peroxisome, plastid | 80.53 | 80.53 |
| CDX95753 | Canola | cytosol, peroxisome, plastid | 80.53 | 80.53 |
| CDY40185 | Canola | plastid | 80.15 | 80.15 |
| CDY40175 | Canola | plasma membrane | 79.39 | 79.39 |
| CDY45435 | Canola | cytosol, peroxisome, plastid | 79.01 | 79.01 |
| CDY40183 | Canola | plastid | 78.63 | 78.63 |
| CDY31774 | Canola | cytosol | 70.23 | 78.3 |
| CDY62820 | Canola | cytosol, endoplasmic reticulum, peroxisome | 78.24 | 77.95 |
| CDX97895 | Canola | cytosol | 69.85 | 77.87 |
| CDY45434 | Canola | cytosol, nucleus, plastid | 77.86 | 77.86 |
| CDY40171 | Canola | cytosol | 64.89 | 76.92 |
| CDY45438 | Canola | cytosol | 76.72 | 76.72 |
| CDY40179 | Canola | cytosol, peroxisome, plastid | 76.34 | 76.63 |
| CDY45433 | Canola | cytosol | 70.61 | 75.51 |
| CDY45441 | Canola | cytosol | 64.5 | 75.45 |
| CDY40165 | Canola | plastid | 74.81 | 74.81 |
| CDY31770 | Canola | plastid | 64.5 | 72.84 |
| CDX86486 | Canola | cytosol, peroxisome, plastid | 70.99 | 70.99 |
| AT2G29340.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 82.06 | 70.03 |
| CDY68057 | Canola | cytosol | 69.85 | 69.85 |
| CDX95752 | Canola | cytosol | 62.6 | 68.91 |
| CDY09917 | Canola | cytosol | 68.32 | 68.32 |
| CDX86485 | Canola | cytosol, peroxisome, plastid | 67.94 | 67.94 |
| CDY06706 | Canola | mitochondrion | 67.94 | 66.92 |
| CDY06260 | Canola | plastid | 66.79 | 66.79 |
| CDY14610 | Canola | mitochondrion | 67.56 | 66.54 |
| CDY10276 | Canola | mitochondrion | 67.56 | 66.54 |
| CDY52942 | Canola | mitochondrion | 66.79 | 65.79 |
| CDY16437 | Canola | mitochondrion | 66.79 | 65.79 |
| CDY40177 | Canola | cytosol | 67.56 | 63.9 |
| CDY64214 | Canola | mitochondrion | 41.6 | 63.74 |
| VIT_06s0004g05320.t01 | Wine grape | endoplasmic reticulum, peroxisome, plastid | 59.54 | 61.9 |
| CDY04977 | Canola | peroxisome | 61.45 | 61.22 |
| VIT_06s0004g05370.t01 | Wine grape | peroxisome | 58.78 | 61.11 |
| VIT_06s0004g05440.t01 | Wine grape | cytosol | 19.08 | 60.98 |
| CDX70101 | Canola | peroxisome | 60.69 | 60.69 |
| CDX98899 | Canola | peroxisome | 60.69 | 60.69 |
| Solyc03g096650.1.1 | Tomato | cytosol | 20.61 | 60.67 |
| CDY14094 | Canola | peroxisome | 60.69 | 60.46 |
| VIT_06s0004g05380.t01 | Wine grape | plastid | 62.21 | 60.37 |
| CDY16436 | Canola | endoplasmic reticulum, vacuole | 24.05 | 60.0 |
| KRH24731 | Soybean | nucleus | 61.07 | 59.93 |
| CDX97893 | Canola | mitochondrion | 61.83 | 59.78 |
| CDY09823 | Canola | peroxisome | 61.83 | 59.78 |
| CDY09824 | Canola | mitochondrion | 61.83 | 59.78 |
| VIT_06s0004g05400.t01 | Wine grape | cytosol | 25.19 | 59.46 |
| CDX95750 | Canola | cytosol | 61.83 | 59.12 |
| CDY31776 | Canola | cytosol, peroxisome, plastid | 61.07 | 59.04 |
| CDY04975 | Canola | mitochondrion | 25.19 | 58.93 |
| VIT_06s0004g05430.t01 | Wine grape | mitochondrion, nucleus, peroxisome | 60.31 | 58.52 |
| KRH24733 | Soybean | nucleus | 59.16 | 58.49 |
| VIT_06s0004g05330.t01 | Wine grape | peroxisome | 56.11 | 57.87 |
| VIT_06s0004g05310.t01 | Wine grape | cytosol | 24.81 | 57.52 |
| KRH24732 | Soybean | cytosol, endoplasmic reticulum, plastid | 58.4 | 56.88 |
| CDY35991 | Canola | plastid | 26.72 | 56.45 |
| CDY51372 | Canola | plastid | 59.92 | 56.27 |
| VIT_06s0004g05360.t01 | Wine grape | cytosol, mitochondrion, plastid | 50.0 | 54.58 |
| CDY72061 | Canola | cytosol | 22.52 | 54.13 |
| VIT_06s0004g05390.t01 | Wine grape | cytosol, plasma membrane, plastid | 47.71 | 50.81 |
| KRH29740 | Soybean | cytosol | 18.32 | 48.98 |
| VIT_06s0004g05450.t01 | Wine grape | plasma membrane | 33.21 | 48.33 |
| CDX98898 | Canola | cytosol, peroxisome, plasma membrane | 56.49 | 47.74 |
| CDX97890 | Canola | cytosol | 61.07 | 47.2 |
| GSMUA_Achr5P04570_001 | Banana | cytosol | 21.37 | 44.09 |
| CDY65683 | Canola | cytosol, mitochondrion | 66.79 | 43.86 |
| CDY35231 | Canola | peroxisome | 17.18 | 36.29 |
| CDY31767 | Canola | plastid | 74.05 | 34.46 |
| CDY50145 | Canola | plastid | 87.02 | 31.49 |
| CDX94534 | Canola | peroxisome | 29.01 | 29.8 |
| CDY16690 | Canola | peroxisome | 29.01 | 29.8 |
| CDX76382 | Canola | cytosol, mitochondrion, peroxisome | 28.63 | 29.18 |
| CDY27447 | Canola | cytosol, mitochondrion, peroxisome | 28.63 | 29.07 |
| CDY43488 | Canola | cytosol | 26.34 | 23.88 |
| CDY27781 | Canola | cytosol, peroxisome, plastid | 25.95 | 23.53 |
| CDY17559 | Canola | cytoskeleton, nucleus, peroxisome | 25.19 | 23.0 |
| CDY05152 | Canola | cytosol | 20.61 | 22.59 |
| CDY08402 | Canola | cytosol | 24.05 | 21.43 |
| CDY00799 | Canola | peroxisome | 23.66 | 20.81 |
| CDX73802 | Canola | peroxisome | 23.66 | 20.81 |
| CDY05153 | Canola | cytosol, nucleus, plastid | 4.2 | 15.71 |
Protein Annotations
| EnsemblPlants:CDX97899 | EnsemblPlantsGene:GSBRNA2T00105239001 | Gene3D:3.40.50.720 | GO:A0A078EAU5 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam | InterPro:Sc_DH/Rdtase_CS |
| PANTHER:PTHR42898 | PANTHER:PTHR42898:SF7 | PFAM:PF13561 | PRINTS:PR00080 | PRINTS:PR00081 | ProteinID:CDX97899 |
| ProteinID:CDX97899.1 | ScanProsite:PS00061 | SUPFAM:SSF51735 | UniParc:UPI0004EE0B0B | MapMan:50.1.1 | : |
Description
BnaC04g40400D
Coordinates
chrLK031901:-:1294381..1295621
Molecular Weight (calculated)
27941.5 Da
IEP (calculated)
7.500
GRAVY (calculated)
0.076
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKRWSLQGM TALETGGVAG IGYAIVEELA SFGARIHVCD ISKTLLNQSL SEWKKKGFQV SGSVCDVSSR PERETLMQTV SSHFDGKLNI FVNNVGVLRG
101: KSTTEYGADD FAFHISTNLE PAYHFSQLSH LLLKASGYGS IVFMSSIAGV VSMSGGSIYG ITKGALNQLA KNLACEWAKD GIRANAVAPN IIKTPQAQPF
201: LDHVSFKEGL LGRTPIGRAG EPNEVASLVV FLCLPAASYI TGQTICVDGG LTVNGFSYQP QA
101: KSTTEYGADD FAFHISTNLE PAYHFSQLSH LLLKASGYGS IVFMSSIAGV VSMSGGSIYG ITKGALNQLA KNLACEWAKD GIRANAVAPN IIKTPQAQPF
201: LDHVSFKEGL LGRTPIGRAG EPNEVASLVV FLCLPAASYI TGQTICVDGG LTVNGFSYQP QA
001: MDKRWSLKGM TALVTGGASG IGYAIVEELA GFGARIHVCD ISEAKLNQSL SEWEKKGFQV SGSVCDVASR PEREELMQTV SSQFDGKLNI LVSNVGVIRS
101: KPTTEYTEDD FAFHISSNVE AAYHFSQLSH PLLKASGYGS IIFVSSIAGV ISFDAGSIYG LTKGALIQLA KNLACEWAKD GIRANAVAPN VINTPLSQSY
201: LEDVSFKKAL LSRTPLGRVG EPNEVASLVA FLCLPAASYI TGQTICVDGG LTVNGFSYQP EEALLSRTSL RRVGEPNEVS SLVVFLCLPA ASYITGQMVK
301: PFVLMEV
101: KPTTEYTEDD FAFHISSNVE AAYHFSQLSH PLLKASGYGS IIFVSSIAGV ISFDAGSIYG LTKGALIQLA KNLACEWAKD GIRANAVAPN VINTPLSQSY
201: LEDVSFKKAL LSRTPLGRVG EPNEVASLVA FLCLPAASYI TGQTICVDGG LTVNGFSYQP EEALLSRTSL RRVGEPNEVS SLVVFLCLPA ASYITGQMVK
301: PFVLMEV
Arabidopsis Description
Tropinone reductase homolog At2g29340 [Source:UniProtKB/Swiss-Prot;Acc:F4IKM1]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.