Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- peroxisome 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039977.1-P | Field mustard | plastid | 54.57 | 95.85 |
| CDY51372 | Canola | plastid | 77.88 | 94.62 |
| CDX97893 | Canola | mitochondrion | 65.19 | 81.55 |
| CDY09824 | Canola | mitochondrion | 65.19 | 81.55 |
| CDY09823 | Canola | peroxisome | 62.83 | 78.6 |
| CDY31776 | Canola | cytosol, peroxisome, plastid | 62.24 | 77.86 |
| AT2G29350.1 | Thale cress | plastid | 61.36 | 77.32 |
| CDY72061 | Canola | cytosol | 24.19 | 75.23 |
| AT2G29290.2 | Thale cress | plastid | 57.82 | 74.81 |
| CDX95750 | Canola | cytosol | 59.59 | 73.72 |
| CDX86485 | Canola | cytosol, peroxisome, plastid | 51.33 | 66.41 |
| CDY68057 | Canola | cytosol | 50.74 | 65.65 |
| CDX86486 | Canola | cytosol, peroxisome, plastid | 50.44 | 65.27 |
| Solyc03g096650.1.1 | Tomato | cytosol | 16.81 | 64.04 |
| VIT_06s0004g05400.t01 | Wine grape | cytosol | 20.94 | 63.96 |
| VIT_06s0004g05310.t01 | Wine grape | cytosol | 21.24 | 63.72 |
| CDY06706 | Canola | mitochondrion | 49.85 | 63.53 |
| VIT_06s0004g05370.t01 | Wine grape | peroxisome | 47.2 | 63.49 |
| VIT_06s0004g05440.t01 | Wine grape | cytosol | 15.34 | 63.41 |
| CDY45434 | Canola | cytosol, nucleus, plastid | 48.67 | 62.98 |
| CDY14610 | Canola | mitochondrion | 49.26 | 62.78 |
| CDY10276 | Canola | mitochondrion | 49.26 | 62.78 |
| CDY14094 | Canola | peroxisome | 48.67 | 62.74 |
| VIT_06s0004g05320.t01 | Wine grape | endoplasmic reticulum, peroxisome, plastid | 46.61 | 62.7 |
| CDY04977 | Canola | peroxisome | 48.38 | 62.36 |
| CDY09917 | Canola | cytosol | 48.08 | 62.21 |
| CDY31772 | Canola | cytosol, peroxisome, plastid | 47.79 | 61.83 |
| CDY52942 | Canola | mitochondrion | 48.38 | 61.65 |
| CDY16437 | Canola | mitochondrion | 48.38 | 61.65 |
| CDY06260 | Canola | plastid | 47.49 | 61.45 |
| CDY40183 | Canola | plastid | 47.49 | 61.45 |
| CDX98899 | Canola | peroxisome | 47.49 | 61.45 |
| CDY45441 | Canola | cytosol | 40.41 | 61.16 |
| VIT_06s0004g05380.t01 | Wine grape | plastid | 48.67 | 61.11 |
| CDX97899 | Canola | peroxisome | 47.2 | 61.07 |
| CDY62820 | Canola | cytosol, endoplasmic reticulum, peroxisome | 47.2 | 60.84 |
| CDY40165 | Canola | plastid | 46.9 | 60.69 |
| CDY40188 | Canola | cytosol, peroxisome, plasma membrane | 46.9 | 60.69 |
| CDY40179 | Canola | cytosol, peroxisome, plastid | 46.61 | 60.54 |
| CDY40175 | Canola | plasma membrane | 46.61 | 60.31 |
| CDY45438 | Canola | cytosol | 46.61 | 60.31 |
| KRH24731 | Soybean | nucleus | 47.2 | 59.93 |
| CDY45432 | Canola | cytosol | 46.31 | 59.92 |
| CDX83306 | Canola | plastid | 46.31 | 59.92 |
| CDX70101 | Canola | peroxisome | 46.31 | 59.92 |
| CDY31768 | Canola | cytosol, peroxisome, plastid | 46.02 | 59.54 |
| CDX95753 | Canola | cytosol, peroxisome, plastid | 46.02 | 59.54 |
| VIT_06s0004g05430.t01 | Wine grape | mitochondrion, nucleus, peroxisome | 47.2 | 59.26 |
| KRH24733 | Soybean | nucleus | 46.31 | 59.25 |
| VIT_06s0004g05360.t01 | Wine grape | cytosol, mitochondrion, plastid | 41.89 | 59.17 |
| CDX83307 | Canola | peroxisome | 45.72 | 59.16 |
| CDY31773 | Canola | plastid | 45.72 | 59.16 |
| CDY31774 | Canola | cytosol | 40.71 | 58.72 |
| CDY40186 | Canola | cytosol | 35.69 | 58.45 |
| CDX95751 | Canola | peroxisome | 45.13 | 58.4 |
| CDX97895 | Canola | cytosol | 40.41 | 58.3 |
| VIT_06s0004g05330.t01 | Wine grape | peroxisome | 43.66 | 58.27 |
| CDY40182 | Canola | cytosol, peroxisome, plastid | 44.84 | 58.02 |
| CDY45435 | Canola | cytosol, peroxisome, plastid | 44.84 | 58.02 |
| KRH24732 | Soybean | cytosol, endoplasmic reticulum, plastid | 46.02 | 57.99 |
| CDX97897 | Canola | cytosol, extracellular | 39.23 | 57.58 |
| CDY40171 | Canola | cytosol | 37.46 | 57.47 |
| CDY64214 | Canola | mitochondrion | 28.91 | 57.31 |
| CDY40185 | Canola | plastid | 44.25 | 57.25 |
| CDY04975 | Canola | mitochondrion | 18.58 | 56.25 |
| CDY16436 | Canola | endoplasmic reticulum, vacuole | 17.4 | 56.19 |
| CDY31770 | Canola | plastid | 38.05 | 55.6 |
| CDY45433 | Canola | cytosol | 39.82 | 55.1 |
| CDY35991 | Canola | plastid | 20.06 | 54.84 |
| CDX95752 | Canola | cytosol | 36.87 | 52.52 |
| CDY40177 | Canola | cytosol | 42.77 | 52.35 |
| KRH29740 | Soybean | cytosol | 15.04 | 52.04 |
| VIT_06s0004g05450.t01 | Wine grape | plasma membrane | 26.84 | 50.56 |
| GSMUA_Achr5P04570_001 | Banana | cytosol | 18.88 | 50.39 |
| VIT_06s0004g05390.t01 | Wine grape | cytosol, plasma membrane, plastid | 35.99 | 49.59 |
| CDX98898 | Canola | cytosol, peroxisome, plasma membrane | 44.25 | 48.39 |
| CDY65683 | Canola | cytosol, mitochondrion | 47.2 | 40.1 |
| CDY35231 | Canola | peroxisome | 11.8 | 32.26 |
| CDX94534 | Canola | peroxisome | 23.3 | 30.98 |
| CDY16690 | Canola | peroxisome | 23.01 | 30.59 |
| CDY31767 | Canola | plastid | 49.56 | 29.84 |
| CDY17559 | Canola | cytoskeleton, nucleus, peroxisome | 24.19 | 28.57 |
| CDX76382 | Canola | cytosol, mitochondrion, peroxisome | 21.53 | 28.4 |
| CDY27781 | Canola | cytosol, peroxisome, plastid | 24.19 | 28.37 |
| CDY43488 | Canola | cytosol | 24.19 | 28.37 |
| CDY27447 | Canola | cytosol, mitochondrion, peroxisome | 21.53 | 28.29 |
| CDY05152 | Canola | cytosol | 17.4 | 24.69 |
| CDY08402 | Canola | cytosol | 20.06 | 23.13 |
| CDY00799 | Canola | peroxisome | 19.76 | 22.48 |
| CDX73802 | Canola | peroxisome | 19.76 | 22.48 |
| CDY50145 | Canola | plastid | 47.2 | 22.1 |
| CDY05153 | Canola | cytosol, nucleus, plastid | 3.83 | 18.57 |
Protein Annotations
| EnsemblPlants:CDX97890 | EnsemblPlantsGene:GSBRNA2T00105228001 | GO:A0A078E6Z8 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016491 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam | InterPro:Sc_DH/Rdtase_CS | PANTHER:PTHR42898 |
| PANTHER:PTHR42898:SF7 | PFAM:PF00106 | PFAM:PF13561 | PRINTS:PR00080 | PRINTS:PR00081 | ProteinID:CDX97890 |
| ProteinID:CDX97890.1 | ScanProsite:PS00061 | SUPFAM:SSF51735 | UniParc:UPI0004EE6C11 | MapMan:50.1.1 | : |
Description
BnaC04g40490D
Coordinates
chrLK031901:-:1224616..1230857
Molecular Weight (calculated)
37234.8 Da
IEP (calculated)
7.841
GRAVY (calculated)
-0.070
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MTNTRESLRD NSRWSLGGMT ALVTGGSKGL GEAVVEELAM LGARVHTCGR NETQLQERLH EWLAKRFLVT TSVCDVSLPD QRARLMETVS SLFQGKLNIL
101: VNNAGTSIVK PATEFSSEDF SFLMATNLES AFHLSQLAHP LLKASGSGSI VVMSSAAGVV HMSVGSIYGA TKGAMNQLAR NLACEWASDN IRVNSVCPWF
201: ITTPLAVSSS LDHPHRGFMR ESWARYHRPF RLKEMNKWVS TRAPGLPSEP LFRSDENIKE KVESRTPMGR VGEPNEVPSL VAFLCLPAAS YITGQSICID
301: GVISEDVSGM HDGIVQFNPV AKYSLTWFCD KRHAIMMLL
101: VNNAGTSIVK PATEFSSEDF SFLMATNLES AFHLSQLAHP LLKASGSGSI VVMSSAAGVV HMSVGSIYGA TKGAMNQLAR NLACEWASDN IRVNSVCPWF
201: ITTPLAVSSS LDHPHRGFMR ESWARYHRPF RLKEMNKWVS TRAPGLPSEP LFRSDENIKE KVESRTPMGR VGEPNEVPSL VAFLCLPAAS YITGQSICID
301: GVISEDVSGM HDGIVQFNPV AKYSLTWFCD KRHAIMMLL
001: MAKAGENSRD KSRWSLEGMT ALVTGGSKGL GEAVVEELAM LGARVHTCAR DETQLQERLR EWQAKGFEVT TSVCDVSSRE QREKLMETVS SVFQGKLNIL
101: VNNAGTGIIK PSTEYTAEDY SFLMATNLES AFHLSQIAHP LLKASGSGSI VFMSSVAGLV HTGASIYGAS KGAMNQLGRS LACEWASDNI RVNSVCPWVI
201: TTPLTSFIFS DEKLRKAVED KTPMGRVGEA NEVSSLVAFL CFPAASYITG QTICVDGGAS VNGFSFKP
101: VNNAGTGIIK PSTEYTAEDY SFLMATNLES AFHLSQIAHP LLKASGSGSI VFMSSVAGLV HTGASIYGAS KGAMNQLGRS LACEWASDNI RVNSVCPWVI
201: TTPLTSFIFS DEKLRKAVED KTPMGRVGEA NEVSSLVAFL CFPAASYITG QTICVDGGAS VNGFSFKP
Arabidopsis Description
Tropinone reductase homolog At2g29150 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW03]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.