Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • cytosol 1
  • mitochondrion 2
  • peroxisome 1
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, peroxisome, plastid
BaCelLo:cytosol
iPSORT:mitochondrion
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70101
CDX83307
CDX95751
CDX95752
CDX97890
CDX98898
CDX98899
CDY04975
CDY04977
CDY14094
CDY51372

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G29350.1 CDX95752 AT2G29310.1 21798944
AT2G29350.1 CDX83307 AT2G29320.1 21798944
AT2G29350.1 CDX95751 AT2G29320.1 21798944
AT2G29350.1 CDX97890 AT2G29350.1 21798944
AT2G29350.1 CDY51372 AT2G29350.1 21798944
AT2G29350.1 CDX70101 AT5G06060.1 21798944
AT2G29350.1 CDX98898 AT5G06060.1 21798944
AT2G29350.1 CDX98899 AT5G06060.1 21798944
AT2G29350.1 CDY04975 AT5G06060.1 21798944
AT2G29350.1 CDY04977 AT5G06060.1 21798944
AT2G29350.1 CDY14094 AT5G06060.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra039977.1-P Field mustard plastid 65.59 94.82
CDY09824 Canola mitochondrion 79.21 81.55
CDX97893 Canola mitochondrion 79.21 81.55
CDY31776 Canola cytosol, peroxisome, plastid 77.06 79.34
CDY09823 Canola peroxisome 77.06 79.34
CDX97890 Canola cytosol 94.62 77.88
AT2G29350.1 Thale cress plastid 74.55 77.32
CDY72061 Canola cytosol 30.11 77.06
AT2G29290.2 Thale cress plastid 69.53 74.05
CDX95750 Canola cytosol 72.4 73.72
Solyc03g096650.1.1 Tomato cytosol 21.15 66.29
CDX86485 Canola cytosol, peroxisome, plastid 62.01 66.03
CDY68057 Canola cytosol 61.29 65.27
CDX86486 Canola cytosol, peroxisome, plastid 60.93 64.89
VIT_06s0004g05400.t01 Wine grape cytosol 25.81 64.86
VIT_06s0004g05310.t01 Wine grape cytosol 26.16 64.6
VIT_06s0004g05370.t01 Wine grape peroxisome 58.06 64.29
CDY06706 Canola mitochondrion 60.93 63.91
VIT_06s0004g05320.t01 Wine grape endoplasmic reticulum, peroxisome, plastid 57.35 63.49
VIT_06s0004g05440.t01 Wine grape cytosol 18.64 63.41
CDY14610 Canola mitochondrion 60.22 63.16
CDY10276 Canola mitochondrion 60.22 63.16
CDY14094 Canola peroxisome 59.5 63.12
CDY04977 Canola peroxisome 59.14 62.74
CDY45434 Canola cytosol, nucleus, plastid 58.42 62.21
VIT_06s0004g05380.t01 Wine grape plastid 59.86 61.85
CDY09917 Canola cytosol 58.06 61.83
CDX98899 Canola peroxisome 58.06 61.83
CDY52942 Canola mitochondrion 58.78 61.65
CDY16437 Canola mitochondrion 58.78 61.65
CDY06260 Canola plastid 57.71 61.45
KRH24731 Soybean nucleus 58.42 61.05
CDY45441 Canola cytosol 48.75 60.71
CDY31772 Canola cytosol, peroxisome, plastid 56.99 60.69
CDY40183 Canola plastid 56.99 60.69
CDY40179 Canola cytosol, peroxisome, plastid 56.63 60.54
KRH24733 Soybean nucleus 57.35 60.38
CDX70101 Canola peroxisome 56.63 60.31
CDY45438 Canola cytosol 56.63 60.31
CDY40175 Canola plasma membrane 56.63 60.31
CDY62820 Canola cytosol, endoplasmic reticulum, peroxisome 56.63 60.08
VIT_06s0004g05430.t01 Wine grape mitochondrion, nucleus, peroxisome 58.06 60.0
VIT_06s0004g05360.t01 Wine grape cytosol, mitochondrion, plastid 51.61 60.0
CDX97899 Canola peroxisome 56.27 59.92
CDY40188 Canola cytosol, peroxisome, plasma membrane 55.91 59.54
CDY40165 Canola plastid 55.56 59.16
CDY31768 Canola cytosol, peroxisome, plastid 55.56 59.16
KRH24732 Soybean cytosol, endoplasmic reticulum, plastid 56.99 59.11
CDY64214 Canola mitochondrion 36.2 59.06
VIT_06s0004g05330.t01 Wine grape peroxisome 53.76 59.06
CDY45432 Canola cytosol 55.2 58.78
CDY31773 Canola plastid 55.2 58.78
CDX83306 Canola plastid 55.2 58.78
CDX83307 Canola peroxisome 54.84 58.4
CDX95753 Canola cytosol, peroxisome, plastid 54.48 58.02
CDY31774 Canola cytosol 48.75 57.87
CDY40182 Canola cytosol, peroxisome, plastid 54.12 57.63
CDX95751 Canola peroxisome 54.12 57.63
CDY45435 Canola cytosol, peroxisome, plastid 54.12 57.63
CDY40171 Canola cytosol 45.52 57.47
CDX97895 Canola cytosol 48.39 57.45
CDY04975 Canola mitochondrion 22.94 57.14
CDY40186 Canola cytosol 42.29 57.0
CDX97897 Canola cytosol, extracellular 46.95 56.71
CDY40185 Canola plastid 52.69 56.11
KRH29740 Soybean cytosol 19.35 55.1
CDY35991 Canola plastid 24.37 54.84
CDY31770 Canola plastid 45.52 54.74
CDY45433 Canola cytosol 47.67 54.29
CDY16436 Canola endoplasmic reticulum, vacuole 20.07 53.33
CDX95752 Canola cytosol 44.8 52.52
CDY40177 Canola cytosol 51.61 51.99
GSMUA_Achr5P04570_001 Banana cytosol 23.3 51.18
VIT_06s0004g05450.t01 Wine grape plasma membrane 32.97 51.11
VIT_06s0004g05390.t01 Wine grape cytosol, plasma membrane, plastid 44.44 50.41
CDX98898 Canola cytosol, peroxisome, plasma membrane 53.76 48.39
CDY65683 Canola cytosol, mitochondrion 57.35 40.1
CDY35231 Canola peroxisome 14.7 33.06
CDX94534 Canola peroxisome 29.39 32.16
CDY16690 Canola peroxisome 29.03 31.76
CDY31767 Canola plastid 60.22 29.84
CDX76382 Canola cytosol, mitochondrion, peroxisome 26.52 28.79
CDY27781 Canola cytosol, peroxisome, plastid 29.75 28.72
CDY27447 Canola cytosol, mitochondrion, peroxisome 26.52 28.68
CDY17559 Canola cytoskeleton, nucleus, peroxisome 29.03 28.22
CDY43488 Canola cytosol 29.03 28.03
CDY05152 Canola cytosol 20.79 24.27
CDY08402 Canola cytosol 24.37 23.13
CDX73802 Canola peroxisome 24.01 22.48
CDY00799 Canola peroxisome 23.66 22.15
CDY50145 Canola plastid 56.99 21.96
CDY05153 Canola cytosol, nucleus, plastid 4.66 18.57
Protein Annotations
Gene3D:3.40.50.720MapMan:50.1.1GO:A0A078IN66UniProt:A0A078IN66EnsemblPlants:CDY51372ProteinID:CDY51372
ProteinID:CDY51372.1GO:GO:0003674GO:GO:0003824GO:GO:0008150GO:GO:0008152GO:GO:0016491
GO:GO:0055114EnsemblPlantsGene:GSBRNA2T00003279001InterPro:NAD(P)-bd_dom_sfPFAM:PF13561PRINTS:PR00080PRINTS:PR00081
ScanProsite:PS00061PANTHER:PTHR42898PANTHER:PTHR42898:SF7InterPro:SDR_famSMART:SM00822SUPFAM:SSF51735
InterPro:Sc_DH/Rdtase_CSUniParc:UPI0004EE3EED::::
Description
BnaA04g28660DBnaA04g28660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IN66]
Coordinates
chrLK032988:-:71246..73187
Molecular Weight (calculated)
29887.8 Da
IEP (calculated)
5.619
GRAVY (calculated)
0.082
Length
279 amino acids
Sequence
(BLAST)
001: MTSTRESFRD NSRWSLGGMT ALVTGGSKGL GEAVVEELVM LGARVHTCGR NEAQLQERLH EWQAKGFPVT TSVCDVSSPD QRAKLMETVS SLFQGKLNIL
101: VNNAGTSIVK PATEFSSEDF SFLMATNLES AFHLSQLAHP LLKASGSGSI VVMSSAAGVV HMSVGSIYGA TKGAMNQLAR NLACEWASDN IRVNSVCPWF
201: ISTPLAVSLF RSDENIREKV ESRTPMGRVG EPNEVSSLVA FLCLPAASYI TGQSICIDGV ISEDVPGMHD GIVQFNLVL
Best Arabidopsis Sequence Match ( AT2G29350.1 )
(BLAST)
001: MAKEGGLGEN SRWSLGGMTA LVTGGSKGIG EAVVEELAML GAKVHTCARD ETQLQERLRE WQAKGFQVTT SVCDVSSRDQ RVKLMETVSS LYQGKLNILV
101: NNVGTSIFKP TTEYTAEDFS FVMATNLESA FHLSQLAHPL LKASGSGSIV LISSAAGVVH VNVGSIYGAT KGAMNQLARN LACEWASDNI RTNSVCPWYI
201: TTPLSNDFFD EEFKKEAVRT TPMGRVGEAN EVSPLVAFLC LPSASYITGQ TICVDGGATV NGFSFKTMP
Arabidopsis Description
SAG13SAG13 [Source:UniProtKB/TrEMBL;Acc:A0A178VTS8]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.