Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G29340.1 | CDY42827 | AT2G42580.1 | 19000166 |
| AT2G29340.1 | CDY51514 | AT2G42580.1 | 19000166 |
| AT2G29340.1 | CDY55390 | AT2G42580.1 | 19000166 |
| AT2G29340.1 | CDY61202 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039971.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 98.09 | 98.09 |
| CDX97899 | Canola | peroxisome | 94.66 | 94.66 |
| CDY31773 | Canola | plastid | 89.31 | 89.31 |
| CDX97897 | Canola | cytosol, extracellular | 78.24 | 88.74 |
| CDY31768 | Canola | cytosol, peroxisome, plastid | 87.02 | 87.02 |
| CDY45432 | Canola | cytosol | 84.73 | 84.73 |
| CDY40188 | Canola | cytosol, peroxisome, plasma membrane | 84.73 | 84.73 |
| CDX83307 | Canola | peroxisome | 83.59 | 83.59 |
| CDY40186 | Canola | cytosol | 65.65 | 83.09 |
| CDX95751 | Canola | peroxisome | 82.82 | 82.82 |
| CDX83306 | Canola | plastid | 82.44 | 82.44 |
| CDY40182 | Canola | cytosol, peroxisome, plastid | 82.06 | 82.06 |
| CDX95753 | Canola | cytosol, peroxisome, plastid | 81.68 | 81.68 |
| CDY40185 | Canola | plastid | 81.3 | 81.3 |
| CDY40175 | Canola | plasma membrane | 80.92 | 80.92 |
| CDY45435 | Canola | cytosol, peroxisome, plastid | 80.53 | 80.53 |
| CDY40183 | Canola | plastid | 80.15 | 80.15 |
| CDY45434 | Canola | cytosol, nucleus, plastid | 80.15 | 80.15 |
| CDY45438 | Canola | cytosol | 79.39 | 79.39 |
| CDY40179 | Canola | cytosol, peroxisome, plastid | 79.01 | 79.31 |
| CDY31774 | Canola | cytosol | 70.99 | 79.15 |
| CDY62820 | Canola | cytosol, endoplasmic reticulum, peroxisome | 79.39 | 79.09 |
| CDX97895 | Canola | cytosol | 70.61 | 78.72 |
| CDY45441 | Canola | cytosol | 67.18 | 78.57 |
| CDY40165 | Canola | plastid | 77.86 | 77.86 |
| CDY40171 | Canola | cytosol | 65.65 | 77.83 |
| CDY45433 | Canola | cytosol | 72.14 | 77.14 |
| CDY31770 | Canola | plastid | 65.27 | 73.71 |
| CDX86486 | Canola | cytosol, peroxisome, plastid | 72.14 | 72.14 |
| AT2G29340.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 83.59 | 71.34 |
| CDY68057 | Canola | cytosol | 70.61 | 70.61 |
| CDX95752 | Canola | cytosol | 63.36 | 69.75 |
| CDY09917 | Canola | cytosol | 69.08 | 69.08 |
| CDX86485 | Canola | cytosol, peroxisome, plastid | 68.7 | 68.7 |
| CDY06706 | Canola | mitochondrion | 68.7 | 67.67 |
| CDY06260 | Canola | plastid | 67.56 | 67.56 |
| CDY14610 | Canola | mitochondrion | 68.32 | 67.29 |
| CDY10276 | Canola | mitochondrion | 68.32 | 67.29 |
| CDY16437 | Canola | mitochondrion | 67.56 | 66.54 |
| CDY40177 | Canola | cytosol | 70.23 | 66.43 |
| CDY52942 | Canola | mitochondrion | 67.18 | 66.17 |
| CDY64214 | Canola | mitochondrion | 41.98 | 64.33 |
| Solyc03g096650.1.1 | Tomato | cytosol | 21.37 | 62.92 |
| VIT_06s0004g05320.t01 | Wine grape | endoplasmic reticulum, peroxisome, plastid | 59.92 | 62.3 |
| VIT_06s0004g05370.t01 | Wine grape | peroxisome | 59.54 | 61.9 |
| CDY04977 | Canola | peroxisome | 61.83 | 61.6 |
| CDX98899 | Canola | peroxisome | 61.45 | 61.45 |
| CDX70101 | Canola | peroxisome | 61.45 | 61.45 |
| KRH24731 | Soybean | nucleus | 62.21 | 61.05 |
| CDY14094 | Canola | peroxisome | 61.07 | 60.84 |
| VIT_06s0004g05380.t01 | Wine grape | plastid | 62.6 | 60.74 |
| CDX97893 | Canola | mitochondrion | 62.6 | 60.52 |
| CDY09824 | Canola | mitochondrion | 62.6 | 60.52 |
| CDY09823 | Canola | peroxisome | 62.6 | 60.52 |
| CDY16436 | Canola | endoplasmic reticulum, vacuole | 24.05 | 60.0 |
| CDY31776 | Canola | cytosol, peroxisome, plastid | 61.83 | 59.78 |
| VIT_06s0004g05440.t01 | Wine grape | cytosol | 18.7 | 59.76 |
| KRH24733 | Soybean | nucleus | 60.31 | 59.62 |
| VIT_06s0004g05400.t01 | Wine grape | cytosol | 25.19 | 59.46 |
| VIT_06s0004g05430.t01 | Wine grape | mitochondrion, nucleus, peroxisome | 60.69 | 58.89 |
| CDX95750 | Canola | cytosol | 61.45 | 58.76 |
| KRH24732 | Soybean | cytosol, endoplasmic reticulum, plastid | 59.92 | 58.36 |
| CDY04975 | Canola | mitochondrion | 24.81 | 58.04 |
| VIT_06s0004g05330.t01 | Wine grape | peroxisome | 56.11 | 57.87 |
| VIT_06s0004g05310.t01 | Wine grape | cytosol | 24.81 | 57.52 |
| CDY35991 | Canola | plastid | 27.1 | 57.26 |
| CDY51372 | Canola | plastid | 60.69 | 56.99 |
| VIT_06s0004g05360.t01 | Wine grape | cytosol, mitochondrion, plastid | 50.76 | 55.42 |
| CDY72061 | Canola | cytosol | 22.9 | 55.05 |
| KRH29740 | Soybean | cytosol | 19.47 | 52.04 |
| VIT_06s0004g05390.t01 | Wine grape | cytosol, plasma membrane, plastid | 48.47 | 51.63 |
| VIT_06s0004g05450.t01 | Wine grape | plasma membrane | 33.97 | 49.44 |
| CDX98898 | Canola | cytosol, peroxisome, plasma membrane | 56.87 | 48.06 |
| CDX97890 | Canola | cytosol | 61.83 | 47.79 |
| GSMUA_Achr5P04570_001 | Banana | cytosol | 22.14 | 45.67 |
| CDY65683 | Canola | cytosol, mitochondrion | 67.18 | 44.11 |
| CDY35231 | Canola | peroxisome | 17.56 | 37.1 |
| CDY31767 | Canola | plastid | 75.57 | 35.17 |
| CDY50145 | Canola | plastid | 87.4 | 31.63 |
| CDY16690 | Canola | peroxisome | 30.15 | 30.98 |
| CDX94534 | Canola | peroxisome | 30.15 | 30.98 |
| CDX76382 | Canola | cytosol, mitochondrion, peroxisome | 29.77 | 30.35 |
| CDY27447 | Canola | cytosol, mitochondrion, peroxisome | 29.77 | 30.23 |
| CDY43488 | Canola | cytosol | 26.72 | 24.22 |
| CDY27781 | Canola | cytosol, peroxisome, plastid | 26.34 | 23.88 |
| CDY17559 | Canola | cytoskeleton, nucleus, peroxisome | 25.57 | 23.34 |
| CDY05152 | Canola | cytosol | 20.23 | 22.18 |
| CDY08402 | Canola | cytosol | 22.9 | 20.41 |
| CDY00799 | Canola | peroxisome | 22.52 | 19.8 |
| CDX73802 | Canola | peroxisome | 22.52 | 19.8 |
| CDY05153 | Canola | cytosol, nucleus, plastid | 4.58 | 17.14 |
Protein Annotations
| EnsemblPlants:CDY31772 | EnsemblPlantsGene:GSBRNA2T00050428001 | Gene3D:3.40.50.720 | GO:A0A078H2M6 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam |
| PANTHER:PTHR42898 | PANTHER:PTHR42898:SF7 | PFAM:PF13561 | PRINTS:PR00080 | PRINTS:PR00081 | ProteinID:CDY31772 |
| ProteinID:CDY31772.1 | SUPFAM:SSF51735 | UniParc:UPI0004EDF2E8 | UniProt:A0A078H2M6 | MapMan:50.1.1 | : |
Description
BnaA04g17080DBnaA04g17080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H2M6]
Coordinates
chrLK032278:+:427446..429683
Molecular Weight (calculated)
27773.2 Da
IEP (calculated)
6.347
GRAVY (calculated)
0.073
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKRWSLQGM TALVTGGAAG IGYAIVEELA SFGGKVHVCD ISETLLNQSL SEWEKKGFQV SGSVCDVSSR PERETLMQTV SSQFDGKLNI FVNNVGVLRG
101: KPTTEYGADD FAFHISTNLE PAYHFSQLSH PLLKASGYGS IVFMSSIAGV VSMSGGSIYG LTKGAVNQLA KSLACEWAKD GIRANAVAPN IIKTPQAQPF
201: LDHVSFKEGL LGRTPLGRAG EPNEVASLVV FLCLPAASYI TGQTICVDGG LTVNGFSYQP QA
101: KPTTEYGADD FAFHISTNLE PAYHFSQLSH PLLKASGYGS IVFMSSIAGV VSMSGGSIYG LTKGAVNQLA KSLACEWAKD GIRANAVAPN IIKTPQAQPF
201: LDHVSFKEGL LGRTPLGRAG EPNEVASLVV FLCLPAASYI TGQTICVDGG LTVNGFSYQP QA
001: MDKRWSLKGM TALVTGGASG IGYAIVEELA GFGARIHVCD ISEAKLNQSL SEWEKKGFQV SGSVCDVASR PEREELMQTV SSQFDGKLNI LVSNVGVIRS
101: KPTTEYTEDD FAFHISSNVE AAYHFSQLSH PLLKASGYGS IIFVSSIAGV ISFDAGSIYG LTKGALIQLA KNLACEWAKD GIRANAVAPN VINTPLSQSY
201: LEDVSFKKAL LSRTPLGRVG EPNEVASLVA FLCLPAASYI TGQTICVDGG LTVNGFSYQP EEALLSRTSL RRVGEPNEVS SLVVFLCLPA ASYITGQMVK
301: PFVLMEV
101: KPTTEYTEDD FAFHISSNVE AAYHFSQLSH PLLKASGYGS IIFVSSIAGV ISFDAGSIYG LTKGALIQLA KNLACEWAKD GIRANAVAPN VINTPLSQSY
201: LEDVSFKKAL LSRTPLGRVG EPNEVASLVA FLCLPAASYI TGQTICVDGG LTVNGFSYQP EEALLSRTSL RRVGEPNEVS SLVVFLCLPA ASYITGQMVK
301: PFVLMEV
Arabidopsis Description
Tropinone reductase homolog At2g29340 [Source:UniProtKB/Swiss-Prot;Acc:F4IKM1]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.