Factsheet for Bra039971.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi

Predictor Summary:

cytosol 3
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	secretory
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000267.1-P
Bra004709.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G29340.1	Bra000267.1-P	AT2G42580.1	19000166
AT2G29340.1	Bra004709.1-P	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31772	Canola	cytosol, peroxisome, plastid	98.09	98.09
Bra039973.1-P	Field mustard	plastid	87.79	87.79
Bra039967.1-P	Field mustard	plastid	86.64	86.64
Bra018404.1-P	Field mustard	cytosol	59.54	83.87
Bra018402.1-P	Field mustard	cytosol	69.85	83.56
Bra039513.1-P	Field mustard	peroxisome	83.21	83.21
Bra018405.1-P	Field mustard	cytosol	83.21	83.21
Bra039514.1-P	Field mustard	cytosol, peroxisome, plastid	82.44	82.44
Bra000476.1-P	Field mustard	cytosol, peroxisome, plastid	82.06	82.06
Bra018401.1-P	Field mustard	cytosol	78.63	81.42
Bra000477.1-P	Field mustard	plastid	81.3	81.3
Bra018391.1-P	Field mustard	cytosol	80.53	80.53
Bra018399.1-P	Field mustard	cytosol, peroxisome, plastid	80.15	80.15
Bra018400.1-P	Field mustard	cytosol, nucleus, plastid	79.01	79.01
Bra039974.1-P	Field mustard	cytosol, plasma membrane, plastid	79.01	78.71
Bra018393.1-P	Field mustard	cytosol	78.63	78.63
Bra039969.1-P	Field mustard	cytosol	78.24	77.95
Bra018396.1-P	Field mustard	cytosol	77.48	77.48
AT2G29340.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	83.59	71.34
Bra039966.1-P	Field mustard	cytosol	77.48	70.49
Bra030683.1-P	Field mustard	cytosol, mitochondrion, plastid	69.08	69.08
Bra015580.1-P	Field mustard	mitochondrion	69.08	68.05
Bra039755.1-P	Field mustard	mitochondrion	68.32	67.29
Bra031575.1-P	Field mustard	plastid	66.79	66.79
Bra027962.1-P	Field mustard	cytosol	42.75	64.74
VIT_06s0004g05320.t01	Wine grape	endoplasmic reticulum, peroxisome, plastid	59.54	61.9
Solyc03g096650.1.1	Tomato	cytosol	20.99	61.8
KRH24731	Soybean	nucleus	62.6	61.42
Bra009159.1-P	Field mustard	cytosol, mitochondrion, peroxisome, plasma membrane	61.07	61.07
Bra028744.1-P	Field mustard	cytosol	61.07	60.84
VIT_06s0004g05370.t01	Wine grape	peroxisome	58.4	60.71
Bra039977.1-P	Field mustard	plastid	44.66	60.62
VIT_06s0004g05380.t01	Wine grape	plastid	62.21	60.37
KRH24733	Soybean	nucleus	60.69	60.0
Bra039976.1-P	Field mustard	cytosol	61.45	59.41
VIT_06s0004g05430.t01	Wine grape	mitochondrion, nucleus, peroxisome	60.31	58.52
KRH24732	Soybean	cytosol, endoplasmic reticulum, plastid	59.92	58.36
VIT_06s0004g05330.t01	Wine grape	peroxisome	56.11	57.87
VIT_06s0004g05400.t01	Wine grape	cytosol	24.43	57.66
VIT_06s0004g05440.t01	Wine grape	cytosol	17.94	57.32
VIT_06s0004g05310.t01	Wine grape	cytosol	24.05	55.75
VIT_06s0004g05360.t01	Wine grape	cytosol, mitochondrion, plastid	50.0	54.58
KRH29740	Soybean	cytosol	19.85	53.06
Bra027961.1-P	Field mustard	cytosol	61.07	52.81
VIT_06s0004g05390.t01	Wine grape	cytosol, plasma membrane, plastid	48.09	51.22
VIT_06s0004g05450.t01	Wine grape	plasma membrane	34.35	50.0
GSMUA_Achr5P04570_001	Banana	cytosol	22.14	45.67
Bra029705.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	27.48	44.17
Bra029476.1-P	Field mustard	peroxisome	30.15	30.98
Bra020854.1-P	Field mustard	cytosol, mitochondrion, peroxisome	29.39	29.96
Bra021324.1-P	Field mustard	cytosol	26.34	23.88
Bra034728.1-P	Field mustard	cytosol	22.9	20.41
Bra001471.1-P	Field mustard	peroxisome	22.14	19.46

Protein Annotations

EnsemblPlants:Bra039971.1	EnsemblPlants:Bra039971.1-P	EnsemblPlantsGene:Bra039971	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR42898	PANTHER:PTHR42898:SF7	PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081	SUPFAM:SSF51735
UniParc:UPI0002544232	UniProt:M4FFU7	MapMan:50.1.1	:	:	:

Description

AT2G29340 (E=1e-126) | short-chain dehydrogenase/reductase (SDR) family protein

Coordinates

chrA04:+:13151246..13152375

Molecular Weight (calculated)

27838.3 Da

IEP (calculated)

6.348

GRAVY (calculated)

0.102

Length

262 amino acids

Sequence
(BLAST)

001: MEKRWSLQGM TVLVTGGAAG IGYAIVEELA IFGGKVHVCD ISEALLNQSL SEWEKKGFQV SGSVCDVSSR PERETLMQTV SSQFDGKLNI FVNNVGVLRG
101: KPTTEYGADD FAFHISTNLE PAYHFSQLSH PLLKASGYGS IVFMSSIAGV VSMSGGSIYG LTKGAVNQLA KNLACEWAKD GIRANAVAPN IIKTPQAQPF
201: LDHVSFKEGL LGRTPLGRAG EPNEVASLVV FLCLPAASYI TGQTICVDGG LTVNGFSYQP QA

Best Arabidopsis Sequence Match ( AT2G29340.1 )
(BLAST)

001: MDKRWSLKGM TALVTGGASG IGYAIVEELA GFGARIHVCD ISEAKLNQSL SEWEKKGFQV SGSVCDVASR PEREELMQTV SSQFDGKLNI LVSNVGVIRS
101: KPTTEYTEDD FAFHISSNVE AAYHFSQLSH PLLKASGYGS IIFVSSIAGV ISFDAGSIYG LTKGALIQLA KNLACEWAKD GIRANAVAPN VINTPLSQSY
201: LEDVSFKKAL LSRTPLGRVG EPNEVASLVA FLCLPAASYI TGQTICVDGG LTVNGFSYQP EEALLSRTSL RRVGEPNEVS SLVVFLCLPA ASYITGQMVK
301: PFVLMEV

Arabidopsis Description

Tropinone reductase homolog At2g29340 [Source:UniProtKB/Swiss-Prot;Acc:F4IKM1]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.