CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68057	Canola	cytosol	90.84	90.84
CDX86486	Canola	cytosol, peroxisome, plastid	89.31	89.31
CDY06260	Canola	plastid	76.72	76.72
CDY09917	Canola	cytosol	76.72	76.72
CDY31773	Canola	plastid	68.7	68.7
CDY31772	Canola	cytosol, peroxisome, plastid	68.7	68.7
CDY06706	Canola	mitochondrion	69.47	68.42
CDY14610	Canola	mitochondrion	69.47	68.42
CDY10276	Canola	mitochondrion	69.47	68.42
CDY45434	Canola	cytosol, nucleus, plastid	68.32	68.32
VIT_06s0004g05440.t01	Wine grape	cytosol	21.37	68.29
CDY40188	Canola	cytosol, peroxisome, plasma membrane	67.94	67.94
CDY45432	Canola	cytosol	67.94	67.94
CDX97899	Canola	peroxisome	67.94	67.94
CDY45441	Canola	cytosol	58.02	67.86
CDY40179	Canola	cytosol, peroxisome, plastid	67.56	67.82
CDY62820	Canola	cytosol, endoplasmic reticulum, peroxisome	67.94	67.68
CDY40186	Canola	cytosol	53.44	67.63
CDY40183	Canola	plastid	67.56	67.56
CDY31768	Canola	cytosol, peroxisome, plastid	67.56	67.56
CDY52942	Canola	mitochondrion	68.32	67.29
CDY40175	Canola	plasma membrane	67.18	67.18
CDY72061	Canola	cytosol	27.86	66.97
CDY16437	Canola	mitochondrion	67.94	66.92
CDY45438	Canola	cytosol	66.79	66.79
CDY40165	Canola	plastid	66.79	66.79
CDX97897	Canola	cytosol, extracellular	58.78	66.67
CDY64214	Canola	mitochondrion	43.51	66.67
CDY40171	Canola	cytosol	56.11	66.52
CDX83306	Canola	plastid	66.41	66.41
CDY31774	Canola	cytosol	59.54	66.38
CDX97895	Canola	cytosol	59.16	65.96
CDY09823	Canola	peroxisome	67.94	65.68
CDY40185	Canola	plastid	65.65	65.65
CDX95753	Canola	cytosol, peroxisome, plastid	65.65	65.65
CDX95751	Canola	peroxisome	65.65	65.65
CDX83307	Canola	peroxisome	65.65	65.65
CDY09824	Canola	mitochondrion	67.56	65.31
CDY31776	Canola	cytosol, peroxisome, plastid	67.56	65.31
CDX97893	Canola	mitochondrion	67.56	65.31
VIT_06s0004g05320.t01	Wine grape	endoplasmic reticulum, peroxisome, plastid	62.6	65.08
VIT_06s0004g05400.t01	Wine grape	cytosol	27.48	64.86
CDY40182	Canola	cytosol, peroxisome, plastid	64.5	64.5
CDY45435	Canola	cytosol, peroxisome, plastid	64.5	64.5
Solyc03g096650.1.1	Tomato	cytosol	21.76	64.04
VIT_06s0004g05310.t01	Wine grape	cytosol	27.48	63.72
CDY45433	Canola	cytosol	59.54	63.67
CDY31770	Canola	plastid	56.11	63.36
VIT_06s0004g05370.t01	Wine grape	peroxisome	60.69	63.1
CDX98899	Canola	peroxisome	62.6	62.6
CDY04977	Canola	peroxisome	62.6	62.36
CDY14094	Canola	peroxisome	62.6	62.36
VIT_06s0004g05380.t01	Wine grape	plastid	64.12	62.22
CDY51372	Canola	plastid	66.03	62.01
VIT_06s0004g05430.t01	Wine grape	mitochondrion, nucleus, peroxisome	63.74	61.85
KRH24731	Soybean	nucleus	62.98	61.8
CDX70101	Canola	peroxisome	61.45	61.45
KRH24733	Soybean	nucleus	61.83	61.13
CDY04975	Canola	mitochondrion	25.95	60.71
CDX95750	Canola	cytosol	63.36	60.58
VIT_06s0004g05330.t01	Wine grape	peroxisome	58.4	60.24
CDY16436	Canola	endoplasmic reticulum, vacuole	23.66	59.05
KRH24732	Soybean	cytosol, endoplasmic reticulum, plastid	59.92	58.36
CDX95752	Canola	cytosol	52.67	57.98
VIT_06s0004g05360.t01	Wine grape	cytosol, mitochondrion, plastid	53.05	57.92
KRH29740	Soybean	cytosol	20.99	56.12
CDY40177	Canola	cytosol	59.16	55.96
VIT_06s0004g05390.t01	Wine grape	cytosol, plasma membrane, plastid	50.0	53.25
CDY35991	Canola	plastid	24.43	51.61
CDX97890	Canola	cytosol	66.41	51.33
GSMUA_Achr5P04570_001	Banana	cytosol	24.81	51.18
VIT_06s0004g05450.t01	Wine grape	plasma membrane	34.73	50.56
CDX98898	Canola	cytosol, peroxisome, plasma membrane	58.78	49.68
CDY65683	Canola	cytosol, mitochondrion	69.47	45.61
CDY31767	Canola	plastid	70.61	32.86
CDY35231	Canola	peroxisome	15.27	32.26
CDX94534	Canola	peroxisome	30.15	30.98
CDY16690	Canola	peroxisome	29.77	30.59
CDX76382	Canola	cytosol, mitochondrion, peroxisome	28.63	29.18
CDY27447	Canola	cytosol, mitochondrion, peroxisome	28.63	29.07
CDY43488	Canola	cytosol	28.63	25.95
CDY27781	Canola	cytosol, peroxisome, plastid	28.63	25.95
CDY17559	Canola	cytoskeleton, nucleus, peroxisome	27.48	25.09
CDY50145	Canola	plastid	67.94	24.59
CDY05152	Canola	cytosol	21.37	23.43
CDY00799	Canola	peroxisome	24.05	21.14
CDX73802	Canola	peroxisome	24.05	21.14
CDY08402	Canola	cytosol	23.66	21.09
CDY05153	Canola	cytosol, nucleus, plastid	4.2	15.71

Protein Annotations

EnsemblPlants:CDX86485	EnsemblPlantsGene:GSBRNA2T00145080001	Gene3D:3.40.50.720	GO:A0A078DB54	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR42898	PANTHER:PTHR42898:SF7	PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081	ProteinID:CDX86485
ProteinID:CDX86485.1	SUPFAM:SSF51735	TMHMM:TMhelix	UniParc:UPI0001AE6152	MapMan:50.1.1	:

Description

BnaC08g02180D

Coordinates

chrLK031846:+:80680..82234

Molecular Weight (calculated)

28040.5 Da

IEP (calculated)

7.242

GRAVY (calculated)

0.019

Length

262 amino acids

Sequence
(BLAST)

001: MDSRWSLRGM TGLVTGGTKG IGYAIVEELA GFGARVHTCA RDQTLLDECL NEWKAKGYQV TGSVCDVSSR PQRDELMKTV SSLFSGKLNI LINNVGTLTS
101: KPATEFTAQD FSSQIATNLE SAYHLSQLAH PLLKASGFGS IVFMSSVCGV VSAGTVSIYS LTKGGMNQLA RNLACEWASD GIRANSVAPW VTRTPLAQDR
201: LDDKKYAEAI CSRTPLGRTC EPSEVASLVT FLCLPAASYI TGQTIFIDGG LTVNGFSYKP EV

Best Arabidopsis Sequence Match ( AT1G07450.1 )
(BLAST)

001: MDINRWSLQG MTALVTGGSK GIGYAIVEEL VGFGARVHIC DIDETLLNEC LSGWHAKGFE VSGSICDVSS RPQRVQLMQT VSSLFGAKLN ILINNVGKYI
101: LKPTLESTAE DFSSLMATNL ESAYYISQLA HPLLKASGNG NIVFISSVTG VVSGTSTIYG VTKGALNQLA RDLACEWASD NIRANSVAPW VTATSLVQKY
201: LEDEIFAEAM FSRTPLGRAC EPREVASLVT FLCLPAASYI TGQTICIDGG FTVNGFSYKP

Arabidopsis Description

Tropinone reductase homolog At1g07450 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX32]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.