Factsheet for GSMUA_Achr10P11560_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

plastid 1
extracellular 2
nucleus 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P25160_001
GSMUA_Achr4P08560_001
GSMUA_Achr7P24480_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26650.1	GSMUA_Achr10P...	AT2G42580.1	19000166
AT1G26650.1	GSMUA_Achr3P25160_001	AT2G42580.1	19000166
AT1G26650.1	GSMUA_Achr4P08560_001	AT2G42580.1	19000166
AT1G26650.1	GSMUA_Achr7P24480_001	AT2G42580.1	19000166
AT1G26650.1	GSMUA_AchrUn_...	AT2G42580.1	19000166
AT1G26650.1	GSMUA_AchrUn_...	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0595900-01	Rice	endoplasmic reticulum, plasma membrane	50.0	44.44
TraesCS2A01G183300.1	Wheat	plasma membrane	53.68	44.11
EER97483	Sorghum	cytosol, extracellular, plasma membrane	53.31	43.81
TraesCS2D01G191100.1	Wheat	plasma membrane	53.31	43.81
Zm00001d022037_P001	Maize	plasma membrane	52.94	43.5
TraesCS2B01G209900.1	Wheat	plasma membrane	52.94	43.5
VIT_01s0113g00470.t01	Wine grape	plasma membrane	54.04	42.36
KRG89547	Soybean	plasma membrane	53.68	40.44
Bra004384.1-P	Field mustard	extracellular, plasma membrane, vacuole	46.69	40.06
CDX95932	Canola	extracellular, plasma membrane, vacuole	46.69	40.06
KRH50552	Soybean	plasma membrane	52.57	40.06
CDY40929	Canola	extracellular, plasma membrane, vacuole	46.32	39.75
AT1G26650.1	Thale cress	plasma membrane	48.9	39.7
CDX85037	Canola	plasma membrane	48.9	39.58
Bra024700.1-P	Field mustard	cytosol, peroxisome, plasma membrane	48.9	39.58
CDY16174	Canola	plasma membrane	48.53	39.29
PGSC0003DMT400068981	Potato	nucleus, peroxisome, plasma membrane	50.0	37.47
Solyc05g012870.1.1	Tomato	cytosol, nucleus, plasma membrane	48.9	37.46
Solyc01g010990.2.1	Tomato	peroxisome	49.63	37.19
PGSC0003DMT400072841	Potato	cytosol, nucleus, plasma membrane	48.9	37.15
AT1G69430.1	Thale cress	plastid	47.79	37.14
GSMUA_Achr9P26820_001	Banana	plasma membrane	28.68	24.07
GSMUA_Achr9P09480_001	Banana	mitochondrion, plasma membrane	22.79	19.62
GSMUA_Achr1P24470_001	Banana	endoplasmic reticulum, plasma membrane	20.96	19.26
GSMUA_Achr6P24000_001	Banana	mitochondrion	21.32	18.53
GSMUA_Achr3P18800_001	Banana	plastid	16.91	15.44

Protein Annotations

EnsemblPlants:GSMUA_Achr10P11560_001	EnsemblPlants:GSMUA_Achr10T11560_001	EnsemblPlantsGene:GSMUA_Achr10G11560_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR33133	PANTHER:PTHR33133:SF1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002949071	UniProt:M0RHD2
MapMan:35.2	:	:	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_113.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr10G11560_001]

Coordinates

chr10:+:20967675..20969047

Molecular Weight (calculated)

29846.3 Da

IEP (calculated)

6.260

GRAVY (calculated)

0.842

Length

272 amino acids

Sequence
(BLAST)

001: MDAIGGWVGG GAPPTRALEI LRETVRILRA DPSPFMTALA LICPVSAALL SGALVPLATA ALLSRRLDLL AVRRVEFFAA VRPIWRCILF TYLWICAAIS
101: ACVVLFLALL LLVCNLCAIL GYPPEIIVYP ALLVVLVFSI VYAHTIIVCN LAGVVSVLEE ISGLRAFLRS VRLIRGKRQV GLLMFLGSTI GMGFVQGLFE
201: HRVKTVSYGD GSSRLWEGPL LVFMYSFVVL VDSMMSAVFY FTCRSSIIEE TDEDVHELEE KENVSTEVTD IK

Best Arabidopsis Sequence Match ( AT1G26650.1 )
(BLAST)

001: METETNQVLR KPELKSYSHK QFHSSNALEI LRETVRILRY NLGALMLTTA VLICPVSALL LPNFLVDQSL VNKLTVKLLL VAKSSGLPLQ PFVKHSCQKF
101: AETAVSSAMC FPVFITVSLL SKAAVVYSVD CSYSREVVDI SKFLVILQKI WRRVVFTYVW ICILIVGCFT FFCVLLVAIC SSFSVLGFSP DFNVYGAMLV
201: GLAFSVVFAN AIIICNTAIV ISVLEDVSGL GALMRASDLI KGQIQVGLLM FLGSTLGLAF VEGLFDHRVK KVSYGDGSSR LWEGPLLVLM YSFVTLIDSM
301: MSAVFYFSCR VYYSMEASRG ETQPIMETVT VVDAE

Arabidopsis Description

Son of sevenless protein [Source:UniProtKB/TrEMBL;Acc:Q9LQY7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.