Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- golgi 2
- plasma membrane 2
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P24470_001 | Banana | endoplasmic reticulum, plasma membrane | 52.72 | 55.74 |
| GSMUA_Achr9P26820_001 | Banana | plasma membrane | 52.4 | 50.62 |
| GSMUA_Achr9P09480_001 | Banana | mitochondrion, plasma membrane | 49.52 | 49.05 |
| VIT_17s0000g06630.t01 | Wine grape | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 43.77 | 42.02 |
| KRH63289 | Soybean | extracellular, mitochondrion, plasma membrane, plastid | 41.53 | 39.63 |
| KRH03520 | Soybean | plastid | 40.26 | 38.89 |
| KRH54594 | Soybean | extracellular, mitochondrion, plasma membrane, plastid | 40.58 | 38.72 |
| PGSC0003DMT400063407 | Potato | vacuole | 39.62 | 37.01 |
| Solyc03g115690.1.1 | Tomato | plasma membrane | 38.98 | 36.75 |
| CDY02155 | Canola | extracellular, peroxisome, plasma membrane | 37.7 | 36.42 |
| CDY23069 | Canola | plasma membrane | 37.38 | 36.11 |
| Bra012967.1-P | Field mustard | extracellular, mitochondrion, peroxisome, plasma membrane | 37.38 | 36.11 |
| CDY16815 | Canola | extracellular, peroxisome, plasma membrane, plastid | 36.74 | 36.05 |
| Bra035935.1-P | Field mustard | extracellular, peroxisome, plasma membrane, plastid | 36.42 | 35.74 |
| CDX87208 | Canola | extracellular, peroxisome, plasma membrane, plastid | 36.1 | 35.31 |
| KRH56883 | Soybean | plasma membrane | 39.62 | 34.73 |
| GSMUA_Achr3P18800_001 | Banana | plastid | 32.27 | 33.89 |
| Solyc06g069680.1.1 | Tomato | plasma membrane | 36.1 | 33.83 |
| AT5G61340.2 | Thale cress | cytosol, peroxisome, plasma membrane | 38.02 | 33.15 |
| VIT_14s0108g01250.t01 | Wine grape | plasma membrane | 33.87 | 32.72 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane, vacuole | 18.53 | 21.32 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P24000_001 | EnsemblPlants:GSMUA_Achr6T24000_001 | EnsemblPlantsGene:GSMUA_Achr6G24000_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR33133 | PANTHER:PTHR33133:SF3 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002964D4D | UniProt:M0T9P8 |
| MapMan:35.2 | : | : | : | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G24000_001]
Coordinates
chr6:-:24351503..24352444
Molecular Weight (calculated)
33971.8 Da
IEP (calculated)
10.956
GRAVY (calculated)
0.705
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKAMKIVRR SLHAFSRSYQ AFAAVAALLV FPASAATLLA QSLPSLSSPI LRSISSRLAF LFEAAGFPPS QFFSLLNSKL SQSIFTFVST LPFALTFSLL
101: AKASVLRTTY GIRRRGAASL LRLYPSLALT HLFNSWLVLS ANAAVLSLLF LAFNVLDALH LSSSGSVLVL SASGVILYSF VLANAVATCN LSVVISAIDG
201: RGGYHSILKT LVLLRGRTAT AITLTLPASL GMAAIEALFQ YRVVRPYRLT ARFHPSAIWE AFSIGYVHSL LVVLDTIMAC VFLRSCRSTV WSRWSNYDHD
301: VDVASEEKIA LRV
101: AKASVLRTTY GIRRRGAASL LRLYPSLALT HLFNSWLVLS ANAAVLSLLF LAFNVLDALH LSSSGSVLVL SASGVILYSF VLANAVATCN LSVVISAIDG
201: RGGYHSILKT LVLLRGRTAT AITLTLPASL GMAAIEALFQ YRVVRPYRLT ARFHPSAIWE AFSIGYVHSL LVVLDTIMAC VFLRSCRSTV WSRWSNYDHD
301: VDVASEEKIA LRV
001: MTCIEKTLSR FGGSFKKHTY SNFSKEKKIA KTRMKKTMED PSKIMRRSIH TFLQNYHRVT TAAAVALPFS AGLLLSQPFF SSSSSTLHMR LNMLFRGAGF
101: SSSHDFFNIL SLKLSQTLSS SLFTLPFSLT FLLLSKAYVI KLLSNNHSAD SSSVFYLRLL KTYVCNFFFL LSANASAFAL FFLAYNTLEA FGFSSRNFYT
201: FLSLSSAIIY SIIIANAFVI SNLALVSSPS SSSGGYTNIL KACLLIRGRN STAMALALPT NLGLAGVEAL FQYRVMRSYY NGDRDIISIA LEGTFIAYLY
301: ALFLVLDTIV NFLFYQSCIK NEEDQNIGRE DEYSIKIQIS ETENTKIHIK GSKNLQEIL
101: SSSHDFFNIL SLKLSQTLSS SLFTLPFSLT FLLLSKAYVI KLLSNNHSAD SSSVFYLRLL KTYVCNFFFL LSANASAFAL FFLAYNTLEA FGFSSRNFYT
201: FLSLSSAIIY SIIIANAFVI SNLALVSSPS SSSGGYTNIL KACLLIRGRN STAMALALPT NLGLAGVEAL FQYRVMRSYY NGDRDIISIA LEGTFIAYLY
301: ALFLVLDTIV NFLFYQSCIK NEEDQNIGRE DEYSIKIQIS ETENTKIHIK GSKNLQEIL
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q9FLJ9]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.