Factsheet for VIT_14s0108g01250.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
vacuole 2
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g06630.t01	Wine grape	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	48.46	48.16
GSMUA_Achr9P09480_001	Banana	mitochondrion, plasma membrane	35.19	36.08
Bra035935.1-P	Field mustard	extracellular, peroxisome, plasma membrane, plastid	35.49	36.05
CDY16815	Canola	extracellular, peroxisome, plasma membrane, plastid	35.49	36.05
Bra012967.1-P	Field mustard	extracellular, mitochondrion, peroxisome, plasma membrane	35.49	35.49
GSMUA_Achr9P26820_001	Banana	plasma membrane	35.49	35.49
GSMUA_Achr1P24470_001	Banana	endoplasmic reticulum, plasma membrane	32.41	35.47
CDY23069	Canola	plasma membrane	34.88	34.88
CDX87208	Canola	extracellular, peroxisome, plasma membrane, plastid	34.26	34.69
CDY02155	Canola	extracellular, peroxisome, plasma membrane	34.57	34.57
GSMUA_Achr6P24000_001	Banana	mitochondrion	32.72	33.87
TraesCS5A01G105000.1	Wheat	plasma membrane	31.48	32.38
TraesCS5D01G116000.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	31.17	32.17
TraesCS5B01G108400.1	Wheat	mitochondrion, plastid	30.86	31.85
AT5G61340.2	Thale cress	cytosol, peroxisome, plasma membrane	35.19	31.75
HORVU5Hr1G028310.1	Barley	plastid	31.79	31.4
Os12t0507400-00	Rice	mitochondrion	31.17	30.79
EES16218	Sorghum	mitochondrion	31.17	29.62
TraesCS5A01G075600.1	Wheat	mitochondrion	30.56	29.2
TraesCS5B01G081900.1	Wheat	mitochondrion	30.56	29.2
Zm00001d035322_P001	Maize	mitochondrion	30.86	28.9
TraesCS5D01G089200.1	Wheat	mitochondrion	30.25	28.82
Zm00001d041518_P001	Maize	mitochondrion	30.25	28.74
KXG23542	Sorghum	mitochondrion, plastid	29.94	27.95
Zm00001d030775_P001	Maize	mitochondrion, plastid	29.01	27.65
Os12t0577200-01	Rice	mitochondrion, plastid	29.63	27.35
VIT_11s0016g04110.t01	Wine grape	plasma membrane	17.59	18.94
GSMUA_Achr3P18800_001	Banana	plastid	17.28	18.79
VIT_01s0113g00470.t01	Wine grape	plasma membrane	19.75	18.44

Protein Annotations

ArrayExpress:VIT_14s0108g01250	EMBL:FN595239	EnsemblPlants:VIT_14s0108g01250.t01	EnsemblPlantsGene:VIT_14s0108g01250	EntrezGene:100256060	EntrezGene:LOC100256060
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR33133	PANTHER:PTHR33133:SF3	ProteinID:CBI22261
ProteinID:CBI22261.3	RefSeq:XP_002278774	RefSeq:XP_002278774.2	TMHMM:TMhelix	UniParc:UPI0001BE2255	UniProt:D7SXG4
wikigene:100256060	wikigene:LOC100256060	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr14:+:29893898..29895110

Molecular Weight (calculated)

35842.3 Da

IEP (calculated)

8.755

GRAVY (calculated)

0.661

Length

324 amino acids

Sequence
(BLAST)

001: MEETPSADME IRATKIVRRS IFIFLKDYQF FTNIPVLLML PFSVFVLLLQ AFSSSSTSPL FVIHALGFSP SLQLFLLSDF GVSYSIFSSV FSLPFTLSSL
101: VMAKGYIIQA LNQHKMVLPP SFSSLVSIYR SLFLTQVCNS VIIFTANAVA FSVLFMGFNS LESFDSSSKN PLILFVARSF SYSFLANTMV LCNFALVVTG
201: MENCSGYLAV FKACSLLRRC GNSRALLMAL PANLGAAAVG ALFHYRIVRA YHLSGRPGCI YMALEGLLIA YLYSLLIVLD TIVSCLFFKS CKPTFQMDQT
301: GGCHYQIELV KGEDNGTYAN RKIP

Best Arabidopsis Sequence Match ( AT5G61340.2 )
(BLAST)

001: MTCIEKTLSR FGGSFKKHTY SNFSKEKKIA KTRMKKTMED PSKIMRRSIH TFLQNYHRVT TAAAVALPFS AGLLLSQPFF SSSSSTLHMR LNMLFRGAGF
101: SSSHDFFNIL SLKLSQTLSS SLFTLPFSLT FLLLSKAYVI KLLSNNHSAD SSSVFYLRLL KTYVCNFFFL LSANASAFAL FFLAYNTLEA FGFSSRNFYT
201: FLSLSSAIIY SIIIANAFVI SNLALVSSPS SSSGGYTNIL KACLLIRGRN STAMALALPT NLGLAGVEAL FQYRVMRSYY NGDRDIISIA LEGTFIAYLY
301: ALFLVLDTIV NFLFYQSCIK NEEDQNIGRE DEYSIKIQIS ETENTKIHIK GSKNLQEIL

Arabidopsis Description

Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q9FLJ9]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.