Factsheet for TraesCS5B01G108400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 2
mitochondrion 3
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G116000.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	97.13	97.13
TraesCS5A01G105000.1	Wheat	plasma membrane	96.5	96.19
HORVU5Hr1G028310.1	Barley	plastid	88.85	85.06
Os12t0507400-00	Rice	mitochondrion	76.11	72.87
KXG23542	Sorghum	mitochondrion, plastid	68.47	61.96
Zm00001d035322_P001	Maize	mitochondrion	63.38	57.51
TraesCS5B01G081900.1	Wheat	mitochondrion	45.22	41.89
GSMUA_Achr9P26820_001	Banana	plasma membrane	38.53	37.35
VIT_17s0000g06630.t01	Wine grape	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	38.53	37.12
GSMUA_Achr9P09480_001	Banana	mitochondrion, plasma membrane	37.26	37.03
KRH03520	Soybean	plastid	37.58	36.42
KRH54594	Soybean	extracellular, mitochondrion, plasma membrane, plastid	37.26	35.67
KRH63289	Soybean	extracellular, mitochondrion, plasma membrane, plastid	36.94	35.37
Bra035935.1-P	Field mustard	extracellular, peroxisome, plasma membrane, plastid	35.35	34.8
CDY23069	Canola	plasma membrane	35.67	34.57
CDY16815	Canola	extracellular, peroxisome, plasma membrane, plastid	35.03	34.48
CDY02155	Canola	extracellular, peroxisome, plasma membrane	35.35	34.26
Bra012967.1-P	Field mustard	extracellular, mitochondrion, peroxisome, plasma membrane	35.03	33.95
CDX87208	Canola	extracellular, peroxisome, plasma membrane, plastid	34.39	33.75
KRH56883	Soybean	plasma membrane	36.94	32.49
AT5G61340.2	Thale cress	cytosol, peroxisome, plasma membrane	36.31	31.75
PGSC0003DMT400063407	Potato	vacuole	33.12	31.04
VIT_14s0108g01250.t01	Wine grape	plasma membrane	31.85	30.86
Solyc03g115690.1.1	Tomato	plasma membrane	32.48	30.72
Solyc06g069680.1.1	Tomato	plasma membrane	31.85	29.94
TraesCS2B01G209900.1	Wheat	plasma membrane	22.29	21.15

Protein Annotations

EnsemblPlants:TraesCS5B01G108400.1	EnsemblPlantsGene:TraesCS5B01G108400	PANTHER:PTHR33133	PANTHER:PTHR33133:SF11	SEG:seg	TMHMM:TMhelix
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:147429199..147430143

Molecular Weight (calculated)

32939.9 Da

IEP (calculated)

9.472

GRAVY (calculated)

0.756

Length

314 amino acids

Sequence
(BLAST)

001: MGSATKIMRT ALHAFFSHYH PAASAAALLA LPFSAAALLS RSPAASLLPA LSLSLRRVLV AAGFPPASQL LFLLNHKLSQ SVFSFLATLP FSLSFLLLAK
101: ACAVRAMQAP PPPRKQRHHE LSALPASCCR YPAMARTQLA NFAALLLANA AVFAALLAAF NAAEALRLGS DGRAVLALSA VGVIVYSVAL ANAAAVCNLA
201: TVVAAAEGRG GCHAFLKALL LVRGDAATAV AVALPASLAT TAVEGLFQLR VMKLYMIDGR ISSAMVCEGL LIAYIHSMIC VLDTVITYMV YQTCKATHYS
301: RDLLELEEKG DFIA

Best Arabidopsis Sequence Match ( AT5G61340.1 )
(BLAST)

001: MKKTMEDPSK IMRRSIHTFL QNYHRVTTAA AVALPFSAGL LLSQPFFSSS SSTLHMRLNM LFRGAGFSSS HDFFNILSLK LSQTLSSSLF TLPFSLTFLL
101: LSKAYVIKLL SNNHSADSSS VFYLRLLKTY VCNFFFLLSA NASAFALFFL AYNTLEAFGF SSRNFYTFLS LSSAIIYSII IANAFVISNL ALVSSPSSSS
201: GGYTNILKAC LLIRGRNSTA MALALPTNLG LAGVEALFQY RVMRSYYNGD RDIISIALEG TFIAYLYALF LVLDTIVNFL FYQSCIKNEE DQNIGREDEY
301: SIKIQISETE NTKIHIKGSK NLQEIL

Arabidopsis Description

Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q9FLJ9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.