Factsheet for TraesCS2B01G209900.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

mitochondrion 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	extracellular, plasma membrane
iPSORT:	mitochondrion
MultiLoc:	extracellular
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26650.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT1G26650.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT1G26650.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT1G26650.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT1G26650.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT1G26650.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT1G26650.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT1G26650.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT1G26650.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G183300.1	Wheat	plasma membrane	98.79	98.79
TraesCS2D01G191100.1	Wheat	plasma membrane	98.19	98.19
Os07t0595900-01	Rice	endoplasmic reticulum, plasma membrane	78.85	85.29
EER97483	Sorghum	cytosol, extracellular, plasma membrane	84.29	84.29
Zm00001d022037_P001	Maize	plasma membrane	83.69	83.69
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, vacuole	43.5	52.94
Bra004384.1-P	Field mustard	extracellular, plasma membrane, vacuole	46.83	48.9
CDX95932	Canola	extracellular, plasma membrane, vacuole	46.83	48.9
CDY40929	Canola	extracellular, plasma membrane, vacuole	46.53	48.58
VIT_01s0113g00470.t01	Wine grape	plasma membrane	46.53	44.38
CDX85037	Canola	plasma membrane	44.11	43.45
AT1G26650.1	Thale cress	plasma membrane	43.81	43.28
CDY16174	Canola	plasma membrane	43.81	43.15
AT1G69430.1	Thale cress	plastid	45.62	43.14
KRH50552	Soybean	plasma membrane	46.22	42.86
Bra024700.1-P	Field mustard	cytosol, peroxisome, plasma membrane	43.5	42.86
KRG89547	Soybean	plasma membrane	46.22	42.38
Solyc05g012870.1.1	Tomato	cytosol, nucleus, plasma membrane	43.2	40.28
PGSC0003DMT400072841	Potato	cytosol, nucleus, plasma membrane	43.5	40.22
PGSC0003DMT400068981	Potato	nucleus, peroxisome, plasma membrane	43.81	39.94
Solyc01g010990.2.1	Tomato	peroxisome	42.9	39.12
TraesCS5B01G081900.1	Wheat	mitochondrion	23.26	22.71
TraesCS5B01G108400.1	Wheat	mitochondrion, plastid	21.15	22.29

Protein Annotations

EnsemblPlants:TraesCS2B01G209900.1	EnsemblPlantsGene:TraesCS2B01G209900	PANTHER:PTHR33133	PANTHER:PTHR33133:SF1	SEG:seg	TMHMM:TMhelix
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:192367100..192368095

Molecular Weight (calculated)

35132.9 Da

IEP (calculated)

7.796

GRAVY (calculated)

0.907

Length

331 amino acids

Sequence
(BLAST)

001: MAQPRNAAAV VRLPAMNALE ILRETVRVLR ADPHAFTYVL FLLLCPASGF LLLSAAALEG AVVLPLARRL LVAAASSGVP VTHFVKQLAH HLAATLVAAV
101: VSFPALLTLL LAARAAVAYT VAAVYAGKPL PAADLSLLAR RAWPRLAATY GLSCAAVAAC LATFLALLVT VCSTLKSMLY PPDIVVCAGL LTVLAFSIVY
201: AHTIIVCSLG GVIAVLEDVA GVNALRRSVQ LMRGQTHVGL LIFLVSTIGL AFVEGLFEHR VKTLSYGDGS SRLWEGPLLI LMYSFVMLID SMMSAVFYFT
301: CRSSSLAILD EEGGSVEEIE MMMDDKSDAV R

Best Arabidopsis Sequence Match ( AT1G69430.1 )
(BLAST)

001: MEMGLSGMMN HGGSNSKLRK FEIESSSSSP SSSSDHKFHS MNALEILRET VRILRYNLGA FMLIALLLIC PVSAILLPNL LVDQSVVNSL TVRLLLVSKS
101: SGLPLLPFVR NSCQKFSETA VSSAMCFPLF ITLSLLSRAA VVYSVDCTYS RKKVVVTKFV VIMQRLWKRL VITYLWICTV IVVCLTSFCV FLVAVCSSFY
201: VLGFSPDFNA YGAILVGLVF SVVFANAIII CNTTIVISIL EDVSGPGALV RASDLIKGQT QVGLLIFLGS TIGLTFVEGL FEHRVKSLSY GDGSSRLWEG
301: PLLVVMYSFV VLIDTMMSAV FYFSCRSYSM EAVEALEASG EIVSQDLSLL

Arabidopsis Description

Son of sevenless protein [Source:UniProtKB/TrEMBL;Acc:Q9C794]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.