CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	peroxisome, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY42827
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26650.1	CDY42827	AT2G42580.1	19000166
AT1G26650.1	CDY51514	AT2G42580.1	19000166
AT1G26650.1	CDY55390	AT2G42580.1	19000166
AT1G26650.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024700.1-P	Field mustard	cytosol, peroxisome, plasma membrane	97.62	97.62
CDX85037	Canola	plasma membrane	95.83	95.83
AT1G26650.1	Thale cress	plasma membrane	85.12	85.37
CDX95932	Canola	extracellular, plasma membrane, vacuole	67.56	71.61
CDY40929	Canola	extracellular, plasma membrane, vacuole	66.67	70.66
KRH50552	Soybean	plasma membrane	61.61	57.98
VIT_01s0113g00470.t01	Wine grape	plasma membrane	59.52	57.64
KRG89547	Soybean	plasma membrane	61.61	57.34
PGSC0003DMT400068981	Potato	nucleus, peroxisome, plasma membrane	60.71	56.2
Solyc01g010990.2.1	Tomato	peroxisome	59.82	55.37
PGSC0003DMT400072841	Potato	cytosol, nucleus, plasma membrane	58.33	54.75
Solyc05g012870.1.1	Tomato	cytosol, nucleus, plasma membrane	57.74	54.65
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, vacuole	39.29	48.53
Os07t0595900-01	Rice	endoplasmic reticulum, plasma membrane	41.07	45.1
TraesCS2A01G183300.1	Wheat	plasma membrane	43.15	43.81
TraesCS2B01G209900.1	Wheat	plasma membrane	43.15	43.81
TraesCS2D01G191100.1	Wheat	plasma membrane	43.15	43.81
EER97483	Sorghum	cytosol, extracellular, plasma membrane	42.26	42.9
Zm00001d022037_P001	Maize	plasma membrane	41.37	41.99
CDY16815	Canola	extracellular, peroxisome, plasma membrane, plastid	21.73	22.88
CDY23069	Canola	plasma membrane	21.73	22.53
CDY02155	Canola	extracellular, peroxisome, plasma membrane	21.73	22.53
CDX87208	Canola	extracellular, peroxisome, plasma membrane, plastid	20.83	21.88

Protein Annotations

EnsemblPlants:CDY16174	EnsemblPlantsGene:GSBRNA2T00090617001	GO:A0A078FTC0	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR33133	PANTHER:PTHR33133:SF1	ProteinID:CDY16174	ProteinID:CDY16174.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EE7B61	UniProt:A0A078FTC0	MapMan:35.2	:	:	:

Description

BnaA09g29080DBnaA09g29080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FTC0]

Coordinates

chrLK032061:+:307651..308964

Molecular Weight (calculated)

36927.7 Da

IEP (calculated)

8.136

GRAVY (calculated)

0.709

Length

336 amino acids

Sequence
(BLAST)

001: METESNPILR KTELKSYSHK HFHSTNALEI LRESVRILRY NLGAFMLTAA VLICPVSAVL LPNFLVDHSL VNKLTVKLLL VAKSSGLPLQ PFVKHSCQKF
101: AETAVSSAMC FPMFVTVSLL SKTAVVYSVD ATYSREKVEI NKFLVALKKL WKRVVYTYLW VCILIVGCFT FFCVLLVSIC SSFSVLGFSP DFNVYGAILV
201: GLAFSIVFAN AIIVCNTAVV ISVLEDVSGA GALARASDLI KGQVQVGLLI FLGSTLGLAF VEGLFDHRVK KVSYGDGSSR LWEGPLLVVM YSFVTLIDSM
301: MSAVFYFSCR VYYSMEASSV GEAQPIMMDT VEVVDT

Best Arabidopsis Sequence Match ( AT1G26650.1 )
(BLAST)

001: METETNQVLR KPELKSYSHK QFHSSNALEI LRETVRILRY NLGALMLTTA VLICPVSALL LPNFLVDQSL VNKLTVKLLL VAKSSGLPLQ PFVKHSCQKF
101: AETAVSSAMC FPVFITVSLL SKAAVVYSVD CSYSREVVDI SKFLVILQKI WRRVVFTYVW ICILIVGCFT FFCVLLVAIC SSFSVLGFSP DFNVYGAMLV
201: GLAFSVVFAN AIIICNTAIV ISVLEDVSGL GALMRASDLI KGQIQVGLLM FLGSTLGLAF VEGLFDHRVK KVSYGDGSSR LWEGPLLVLM YSFVTLIDSM
301: MSAVFYFSCR VYYSMEASRG ETQPIMETVT VVDAE

Arabidopsis Description

Son of sevenless protein [Source:UniProtKB/TrEMBL;Acc:Q9LQY7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.