Factsheet for PGSC0003DMT400072841

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g012870.1.1	Tomato	cytosol, nucleus, plasma membrane	94.97	95.77
PGSC0003DMT400068981	Potato	nucleus, peroxisome, plasma membrane	74.3	73.28
VIT_01s0113g00470.t01	Wine grape	plasma membrane	61.73	63.69
Bra004384.1-P	Field mustard	extracellular, plasma membrane, vacuole	55.59	62.78
CDX95932	Canola	extracellular, plasma membrane, vacuole	55.59	62.78
CDY40929	Canola	extracellular, plasma membrane, vacuole	55.31	62.46
AT1G26650.1	Thale cress	plasma membrane	56.15	60.0
KRG89547	Soybean	plasma membrane	60.06	59.56
KRH50552	Soybean	plasma membrane	59.22	59.38
AT1G69430.1	Thale cress	plastid	57.82	59.14
CDX85037	Canola	plasma membrane	55.31	58.93
Bra024700.1-P	Field mustard	cytosol, peroxisome, plasma membrane	55.03	58.63
CDY16174	Canola	plasma membrane	54.75	58.33
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, vacuole	37.15	48.9
Os07t0595900-01	Rice	endoplasmic reticulum, plasma membrane	37.71	44.12
EER97483	Sorghum	cytosol, extracellular, plasma membrane	40.22	43.5
TraesCS2A01G183300.1	Wheat	plasma membrane	40.22	43.5
TraesCS2B01G209900.1	Wheat	plasma membrane	40.22	43.5
TraesCS2D01G191100.1	Wheat	plasma membrane	40.22	43.5
Zm00001d022037_P001	Maize	plasma membrane	39.94	43.2
PGSC0003DMT400063407	Potato	vacuole	21.51	22.99

Protein Annotations

EnsemblPlants:PGSC0003DMT400072841	EnsemblPlantsGene:PGSC0003DMG400028338	EntrezGene:102581421	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR33133	PANTHER:PTHR33133:SF1	PGSC:PGSC0003DMG400028338	RefSeq:XP_006348815.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI00029650CA	UniProt:M1CR21	MapMan:35.2	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400028338]

Coordinates

chr5:-:149896..150972

Molecular Weight (calculated)

39872.7 Da

IEP (calculated)

5.746

GRAVY (calculated)

0.647

Length

358 amino acids

Sequence
(BLAST)

001: MEAANLTGLS PRLKSISLEK DKNDDPDFED SKLEDRHFHS MDALEILKET VTILRYNPIG FLSIAALLIC PVSAVLLSNV LVDQYVVKKL MIRLLFLAKS
101: SGLPLKPFIN QSCQKFSEMV ISAVMCFPLY VSLLLLSKAA IVYSVDCTYS RKNFDSKKFY IIVTKIWKRI VVTYMWVCMV ITGCLALFLV LLVAVSSAFS
201: VMGFPPDLIL YPAMIVGIIF SIILANAMII CNIAIVISVL EDDSGPEALL RSSSLIKGQT QVGLLIFLGS TIGMTFVEGL FEHRVKIISY EDGSSRIWEG
301: PLLVILYSFV MLIDSMMSTV FYFSCKSYRM EASNEESLPV LEALTISSAL AEVQQQHV

Best Arabidopsis Sequence Match ( AT1G69430.1 )
(BLAST)

001: MEMGLSGMMN HGGSNSKLRK FEIESSSSSP SSSSDHKFHS MNALEILRET VRILRYNLGA FMLIALLLIC PVSAILLPNL LVDQSVVNSL TVRLLLVSKS
101: SGLPLLPFVR NSCQKFSETA VSSAMCFPLF ITLSLLSRAA VVYSVDCTYS RKKVVVTKFV VIMQRLWKRL VITYLWICTV IVVCLTSFCV FLVAVCSSFY
201: VLGFSPDFNA YGAILVGLVF SVVFANAIII CNTTIVISIL EDVSGPGALV RASDLIKGQT QVGLLIFLGS TIGLTFVEGL FEHRVKSLSY GDGSSRLWEG
301: PLLVVMYSFV VLIDTMMSAV FYFSCRSYSM EAVEALEASG EIVSQDLSLL

Arabidopsis Description

Son of sevenless protein [Source:UniProtKB/TrEMBL;Acc:Q9C794]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.