Factsheet for Solyc05g012870.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072841	Potato	cytosol, nucleus, plasma membrane	95.77	94.97
Solyc01g010990.2.1	Tomato	peroxisome	72.39	70.8
VIT_01s0113g00470.t01	Wine grape	plasma membrane	62.25	63.69
Bra004384.1-P	Field mustard	extracellular, plasma membrane, vacuole	55.77	62.46
CDX95932	Canola	extracellular, plasma membrane, vacuole	55.77	62.46
CDY40929	Canola	extracellular, plasma membrane, vacuole	55.49	62.15
KRG89547	Soybean	plasma membrane	60.85	59.83
KRH50552	Soybean	plasma membrane	60.0	59.66
AT1G69430.1	Thale cress	plastid	58.03	58.86
AT1G26650.1	Thale cress	plasma membrane	55.49	58.81
CDX85037	Canola	plasma membrane	55.21	58.33
Bra024700.1-P	Field mustard	cytosol, peroxisome, plasma membrane	54.93	58.04
CDY16174	Canola	plasma membrane	54.65	57.74
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, vacuole	37.46	48.9
Os07t0595900-01	Rice	endoplasmic reticulum, plasma membrane	38.31	44.44
EER97483	Sorghum	cytosol, extracellular, plasma membrane	40.85	43.81
TraesCS2A01G183300.1	Wheat	plasma membrane	40.28	43.2
TraesCS2B01G209900.1	Wheat	plasma membrane	40.28	43.2
TraesCS2D01G191100.1	Wheat	plasma membrane	40.28	43.2
Zm00001d022037_P001	Maize	plasma membrane	40.28	43.2
Solyc03g115690.1.1	Tomato	plasma membrane	21.69	23.19
Solyc06g069680.1.1	Tomato	plasma membrane	21.69	23.05

Protein Annotations

EnsemblPlants:Solyc05g012870.1.1	EnsemblPlantsGene:Solyc05g012870.1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR33133
PANTHER:PTHR33133:SF1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002765AB2	UniProt:K4BY09	MapMan:35.2

Description

No Description!

Coordinates

chr5:+:6018682..6019749

Molecular Weight (calculated)

39423.1 Da

IEP (calculated)

5.036

GRAVY (calculated)

0.685

Length

355 amino acids

Sequence
(BLAST)

001: MEAANLTGLS PRLKSISLER DKNDDPELEN SELEEDRHFH SMDALEILKE TVTILRYNPI GFLSIAALLI CPVSAVLLSN VLVDQYVVKK LMIRLLFLAK
101: SSGLPLKPFI NQSCQKFSEM VISAVVCFPL YVSLLLLSKA AIVYSVDCTY SRKNFDGKKF YIIVTKIWKR ILVTYIWVCM VITGCLTLFL VLLVAVSSAF
201: SVIGFPPDLI LYTAMIVGII FSIILANAMI ICNIAVVISV LEDDSGPEAL LRSSSLIKGQ TQVGLLIFLG STIGMTFVEG LFEHRVKIIS YEDGSSRIWE
301: GPLLVILYSF VMLIDSMMST VFYFSCKSYR MEASNEESLP VLEALAISSA LAEVQ

Best Arabidopsis Sequence Match ( AT1G69430.1 )
(BLAST)

001: MEMGLSGMMN HGGSNSKLRK FEIESSSSSP SSSSDHKFHS MNALEILRET VRILRYNLGA FMLIALLLIC PVSAILLPNL LVDQSVVNSL TVRLLLVSKS
101: SGLPLLPFVR NSCQKFSETA VSSAMCFPLF ITLSLLSRAA VVYSVDCTYS RKKVVVTKFV VIMQRLWKRL VITYLWICTV IVVCLTSFCV FLVAVCSSFY
201: VLGFSPDFNA YGAILVGLVF SVVFANAIII CNTTIVISIL EDVSGPGALV RASDLIKGQT QVGLLIFLGS TIGLTFVEGL FEHRVKSLSY GDGSSRLWEG
301: PLLVVMYSFV VLIDTMMSAV FYFSCRSYSM EAVEALEASG EIVSQDLSLL

Arabidopsis Description

Son of sevenless protein [Source:UniProtKB/TrEMBL;Acc:Q9C794]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.