Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G26650.1 | CDY42827 | AT2G42580.1 | 19000166 |
| AT1G26650.1 | CDY51514 | AT2G42580.1 | 19000166 |
| AT1G26650.1 | CDY55390 | AT2G42580.1 | 19000166 |
| AT1G26650.1 | CDY61202 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16174 | Canola | plasma membrane | 95.83 | 95.83 |
| AT1G26650.1 | Thale cress | plasma membrane | 84.52 | 84.78 |
| CDX95932 | Canola | extracellular, plasma membrane, vacuole | 67.56 | 71.61 |
| CDY40929 | Canola | extracellular, plasma membrane, vacuole | 66.67 | 70.66 |
| VIT_01s0113g00470.t01 | Wine grape | plasma membrane | 59.82 | 57.93 |
| KRH50552 | Soybean | plasma membrane | 61.31 | 57.7 |
| KRG89547 | Soybean | plasma membrane | 61.61 | 57.34 |
| PGSC0003DMT400068981 | Potato | nucleus, peroxisome, plasma membrane | 61.01 | 56.47 |
| Solyc01g010990.2.1 | Tomato | peroxisome | 59.82 | 55.37 |
| PGSC0003DMT400072841 | Potato | cytosol, nucleus, plasma membrane | 58.93 | 55.31 |
| Solyc05g012870.1.1 | Tomato | cytosol, nucleus, plasma membrane | 58.33 | 55.21 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane, vacuole | 39.58 | 48.9 |
| Os07t0595900-01 | Rice | endoplasmic reticulum, plasma membrane | 41.37 | 45.42 |
| TraesCS2B01G209900.1 | Wheat | plasma membrane | 43.45 | 44.11 |
| TraesCS2D01G191100.1 | Wheat | plasma membrane | 43.45 | 44.11 |
| TraesCS2A01G183300.1 | Wheat | plasma membrane | 43.45 | 44.11 |
| EER97483 | Sorghum | cytosol, extracellular, plasma membrane | 42.56 | 43.2 |
| Zm00001d022037_P001 | Maize | plasma membrane | 41.96 | 42.6 |
| CDY16815 | Canola | extracellular, peroxisome, plasma membrane, plastid | 22.32 | 23.51 |
| CDY23069 | Canola | plasma membrane | 22.62 | 23.46 |
| CDY02155 | Canola | extracellular, peroxisome, plasma membrane | 22.62 | 23.46 |
| CDX87208 | Canola | extracellular, peroxisome, plasma membrane, plastid | 21.13 | 22.19 |
Protein Annotations
| EnsemblPlants:CDX85037 | EnsemblPlantsGene:GSBRNA2T00142476001 | GO:A0A078D7E6 | PANTHER:PTHR33133 | PANTHER:PTHR33133:SF1 | ProteinID:CDX85037 |
| ProteinID:CDX85037.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EDFD95 | MapMan:35.2 | : |
Description
BnaC05g20180D
Coordinates
chrLK031839:+:1669353..1670890
Molecular Weight (calculated)
36934.8 Da
IEP (calculated)
8.140
GRAVY (calculated)
0.729
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: METESNLVLR KTELKSYSHK HFHSTNALEI LRESVRILRY NLGAFMLTAA VLICPVSAVL LPNFLVDHSL VNKLTVKLLL VAKSSGLPLQ PFVKHSCQKF
101: AETAVSSAMC FPLFVTVSLL SKAAVVYSVD ATYSREKVEI NKFLAALKKL WKRVVYTYLW VCILIVGCFT FFCVLLVSIC SSFSVLGFSP DFNVYGAILV
201: GLAFSIVFAN AIIVCNTAVV ISVLEDVSGA GALVRASDLI KGQVQVGLLI FLGSTLGLAF VEGLFDHRVK KLSYGDGSSR LWEGPLLVVM YSFVTLIDSM
301: MSAVFYFSCR VYYSMEASSV GETHPIMMDT VEVVDT
101: AETAVSSAMC FPLFVTVSLL SKAAVVYSVD ATYSREKVEI NKFLAALKKL WKRVVYTYLW VCILIVGCFT FFCVLLVSIC SSFSVLGFSP DFNVYGAILV
201: GLAFSIVFAN AIIVCNTAVV ISVLEDVSGA GALVRASDLI KGQVQVGLLI FLGSTLGLAF VEGLFDHRVK KLSYGDGSSR LWEGPLLVVM YSFVTLIDSM
301: MSAVFYFSCR VYYSMEASSV GETHPIMMDT VEVVDT
001: METETNQVLR KPELKSYSHK QFHSSNALEI LRETVRILRY NLGALMLTTA VLICPVSALL LPNFLVDQSL VNKLTVKLLL VAKSSGLPLQ PFVKHSCQKF
101: AETAVSSAMC FPVFITVSLL SKAAVVYSVD CSYSREVVDI SKFLVILQKI WRRVVFTYVW ICILIVGCFT FFCVLLVAIC SSFSVLGFSP DFNVYGAMLV
201: GLAFSVVFAN AIIICNTAIV ISVLEDVSGL GALMRASDLI KGQIQVGLLM FLGSTLGLAF VEGLFDHRVK KVSYGDGSSR LWEGPLLVLM YSFVTLIDSM
301: MSAVFYFSCR VYYSMEASRG ETQPIMETVT VVDAE
101: AETAVSSAMC FPVFITVSLL SKAAVVYSVD CSYSREVVDI SKFLVILQKI WRRVVFTYVW ICILIVGCFT FFCVLLVAIC SSFSVLGFSP DFNVYGAMLV
201: GLAFSVVFAN AIIICNTAIV ISVLEDVSGL GALMRASDLI KGQIQVGLLM FLGSTLGLAF VEGLFDHRVK KVSYGDGSSR LWEGPLLVLM YSFVTLIDSM
301: MSAVFYFSCR VYYSMEASRG ETQPIMETVT VVDAE
Arabidopsis Description
Son of sevenless protein [Source:UniProtKB/TrEMBL;Acc:Q9LQY7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.