Factsheet for PGSC0003DMT400068981

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, plasma membrane

Predictor Summary:

nucleus 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, peroxisome, plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
PTS1:	peroxisome
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g010990.2.1	Tomato	peroxisome	97.52	97.52
PGSC0003DMT400072841	Potato	cytosol, nucleus, plasma membrane	73.28	74.3
VIT_01s0113g00470.t01	Wine grape	plasma membrane	62.26	65.13
Bra004384.1-P	Field mustard	extracellular, plasma membrane, vacuole	53.99	61.83
CDX95932	Canola	extracellular, plasma membrane, vacuole	53.99	61.83
AT1G26650.1	Thale cress	plasma membrane	57.02	61.79
CDY40929	Canola	extracellular, plasma membrane, vacuole	53.44	61.2
CDX85037	Canola	plasma membrane	56.47	61.01
Bra024700.1-P	Field mustard	cytosol, peroxisome, plasma membrane	56.2	60.71
CDY16174	Canola	plasma membrane	56.2	60.71
KRH50552	Soybean	plasma membrane	58.95	59.94
KRG89547	Soybean	plasma membrane	59.5	59.83
AT1G69430.1	Thale cress	plastid	57.58	59.71
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, vacuole	37.47	50.0
Os07t0595900-01	Rice	endoplasmic reticulum, plasma membrane	37.19	44.12
TraesCS2A01G183300.1	Wheat	plasma membrane	39.94	43.81
TraesCS2B01G209900.1	Wheat	plasma membrane	39.94	43.81
TraesCS2D01G191100.1	Wheat	plasma membrane	39.94	43.81
EER97483	Sorghum	cytosol, extracellular, plasma membrane	39.94	43.81
Zm00001d022037_P001	Maize	plasma membrane	39.67	43.5
PGSC0003DMT400063407	Potato	vacuole	22.04	23.88

Protein Annotations

EnsemblPlants:PGSC0003DMT400068981	EnsemblPlantsGene:PGSC0003DMG400026831	EntrezGene:102587208	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR33133	PANTHER:PTHR33133:SF1	PGSC:PGSC0003DMG400026831	RefSeq:XP_006359583.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002953B27	UniProt:M1CJR4	MapMan:35.2	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400026831]

Coordinates

chr1:-:51736306..51738370

Molecular Weight (calculated)

40120.9 Da

IEP (calculated)

7.401

GRAVY (calculated)

0.680

Length

363 amino acids

Sequence
(BLAST)

001: MEISSGLSPR VNSVSSGEGK KDDPNHQNFE LESIDLVSHT DHQFLTLNAL EILRETVRIL RYNSIGFMTI AALLICPVSA VVLSNVLVYQ PFVTRLSMRL
101: LLVAKTSGLP LKPFIKQSCH KFSEVVISAV MCFPLYVTLS LLSKAAIVYS VDCTYSRKKF DSQKFYLIMT KIWKRVVVTY LWVCVVIAGC LTLFIVLLVS
201: VSSVFSIMGF PPDLILYPAM VVGMIFSIIL ANAIIICNIA IVISVLEDDS GPQALLMSSS LIKGQTQVGL LIFLGSTIGM AIVQGLFEHR VKTISYGDGS
301: SRLWEGPLLV ILYSFVILID SMMSTVFYFS CKSYRMETSS EETQPVLEAL TISSAFAEVQ SHV

Best Arabidopsis Sequence Match ( AT1G26650.1 )
(BLAST)

001: METETNQVLR KPELKSYSHK QFHSSNALEI LRETVRILRY NLGALMLTTA VLICPVSALL LPNFLVDQSL VNKLTVKLLL VAKSSGLPLQ PFVKHSCQKF
101: AETAVSSAMC FPVFITVSLL SKAAVVYSVD CSYSREVVDI SKFLVILQKI WRRVVFTYVW ICILIVGCFT FFCVLLVAIC SSFSVLGFSP DFNVYGAMLV
201: GLAFSVVFAN AIIICNTAIV ISVLEDVSGL GALMRASDLI KGQIQVGLLM FLGSTLGLAF VEGLFDHRVK KVSYGDGSSR LWEGPLLVLM YSFVTLIDSM
301: MSAVFYFSCR VYYSMEASRG ETQPIMETVT VVDAE

Arabidopsis Description

Son of sevenless protein [Source:UniProtKB/TrEMBL;Acc:Q9LQY7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.