Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004384.1-P | Field mustard | extracellular, plasma membrane, vacuole | 79.14 | 87.38 |
| CDX95932 | Canola | extracellular, plasma membrane, vacuole | 79.14 | 87.38 |
| CDY40929 | Canola | extracellular, plasma membrane, vacuole | 78.0 | 86.12 |
| AT1G26650.1 | Thale cress | plasma membrane | 68.0 | 71.04 |
| VIT_01s0113g00470.t01 | Wine grape | plasma membrane | 61.43 | 61.96 |
| KRH50552 | Soybean | plasma membrane | 61.71 | 60.5 |
| KRG89547 | Soybean | plasma membrane | 62.0 | 60.11 |
| Solyc05g012870.1.1 | Tomato | cytosol, nucleus, plasma membrane | 58.86 | 58.03 |
| PGSC0003DMT400072841 | Potato | cytosol, nucleus, plasma membrane | 59.14 | 57.82 |
| PGSC0003DMT400068981 | Potato | nucleus, peroxisome, plasma membrane | 59.71 | 57.58 |
| Solyc01g010990.2.1 | Tomato | peroxisome | 59.14 | 57.02 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane, vacuole | 37.14 | 47.79 |
| Os07t0595900-01 | Rice | endoplasmic reticulum, plasma membrane | 41.14 | 47.06 |
| EER97483 | Sorghum | cytosol, extracellular, plasma membrane | 44.0 | 46.53 |
| Zm00001d022037_P001 | Maize | plasma membrane | 43.14 | 45.62 |
| TraesCS2D01G191100.1 | Wheat | plasma membrane | 43.14 | 45.62 |
| TraesCS2B01G209900.1 | Wheat | plasma membrane | 43.14 | 45.62 |
| TraesCS2A01G183300.1 | Wheat | plasma membrane | 43.14 | 45.62 |
| AT5G61340.2 | Thale cress | cytosol, peroxisome, plasma membrane | 22.29 | 21.73 |
Protein Annotations
| MapMan:35.2 | EntrezGene:843275 | UniProt:A0A178W6X8 | ProteinID:AAG60093.1 | ProteinID:AAX55097.1 | ProteinID:AEE34924.1 |
| ArrayExpress:AT1G69430 | EnsemblPlantsGene:AT1G69430 | RefSeq:AT1G69430 | TAIR:AT1G69430 | RefSeq:AT1G69430-TAIR-G | EnsemblPlants:AT1G69430.1 |
| TAIR:AT1G69430.1 | Unigene:At.52448 | EMBL:DQ132681 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | RefSeq:NP_177102.1 | ProteinID:OAP13245.1 | PO:PO:0000084 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0007616 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR33133 |
| PANTHER:PTHR33133:SF1 | UniProt:Q9C794 | TMHMM:TMhelix | UniParc:UPI00000A3567 | SEG:seg | : |
Description
Son of sevenless protein [Source:UniProtKB/TrEMBL;Acc:Q9C794]
Coordinates
chr1:+:26097729..26099388
Molecular Weight (calculated)
38291.5 Da
IEP (calculated)
7.879
GRAVY (calculated)
0.767
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMGLSGMMN HGGSNSKLRK FEIESSSSSP SSSSDHKFHS MNALEILRET VRILRYNLGA FMLIALLLIC PVSAILLPNL LVDQSVVNSL TVRLLLVSKS
101: SGLPLLPFVR NSCQKFSETA VSSAMCFPLF ITLSLLSRAA VVYSVDCTYS RKKVVVTKFV VIMQRLWKRL VITYLWICTV IVVCLTSFCV FLVAVCSSFY
201: VLGFSPDFNA YGAILVGLVF SVVFANAIII CNTTIVISIL EDVSGPGALV RASDLIKGQT QVGLLIFLGS TIGLTFVEGL FEHRVKSLSY GDGSSRLWEG
301: PLLVVMYSFV VLIDTMMSAV FYFSCRSYSM EAVEALEASG EIVSQDLSLL
101: SGLPLLPFVR NSCQKFSETA VSSAMCFPLF ITLSLLSRAA VVYSVDCTYS RKKVVVTKFV VIMQRLWKRL VITYLWICTV IVVCLTSFCV FLVAVCSSFY
201: VLGFSPDFNA YGAILVGLVF SVVFANAIII CNTTIVISIL EDVSGPGALV RASDLIKGQT QVGLLIFLGS TIGLTFVEGL FEHRVKSLSY GDGSSRLWEG
301: PLLVVMYSFV VLIDTMMSAV FYFSCRSYSM EAVEALEASG EIVSQDLSLL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.