Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16174 | Canola | plasma membrane | 85.37 | 85.12 |
| Bra024700.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 84.78 | 84.52 |
| CDX85037 | Canola | plasma membrane | 84.78 | 84.52 |
| AT1G69430.1 | Thale cress | plastid | 71.04 | 68.0 |
| VIT_01s0113g00470.t01 | Wine grape | plasma membrane | 63.58 | 61.38 |
| KRH50552 | Soybean | plasma membrane | 63.58 | 59.66 |
| KRG89547 | Soybean | plasma membrane | 63.58 | 59.0 |
| PGSC0003DMT400068981 | Potato | nucleus, peroxisome, plasma membrane | 61.79 | 57.02 |
| Solyc01g010990.2.1 | Tomato | peroxisome | 60.9 | 56.2 |
| PGSC0003DMT400072841 | Potato | cytosol, nucleus, plasma membrane | 60.0 | 56.15 |
| Solyc05g012870.1.1 | Tomato | cytosol, nucleus, plasma membrane | 58.81 | 55.49 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane, vacuole | 39.7 | 48.9 |
| Os07t0595900-01 | Rice | endoplasmic reticulum, plasma membrane | 41.79 | 45.75 |
| EER97483 | Sorghum | cytosol, extracellular, plasma membrane | 43.58 | 44.11 |
| TraesCS2A01G183300.1 | Wheat | plasma membrane | 43.28 | 43.81 |
| TraesCS2B01G209900.1 | Wheat | plasma membrane | 43.28 | 43.81 |
| TraesCS2D01G191100.1 | Wheat | plasma membrane | 43.28 | 43.81 |
| Zm00001d022037_P001 | Maize | plasma membrane | 42.69 | 43.2 |
| AT5G61340.2 | Thale cress | cytosol, peroxisome, plasma membrane | 22.99 | 21.45 |
Protein Annotations
| MapMan:35.2 | EntrezGene:839205 | UniProt:A0A178W4E5 | ProteinID:AAF87024.1 | ProteinID:AEE30714.1 | ArrayExpress:AT1G26650 |
| EnsemblPlantsGene:AT1G26650 | RefSeq:AT1G26650 | TAIR:AT1G26650 | RefSeq:AT1G26650-TAIR-G | EnsemblPlants:AT1G26650.1 | TAIR:AT1G26650.1 |
| Unigene:At.21475 | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| RefSeq:NP_564252.2 | ProteinID:OAP12934.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR33133 | PANTHER:PTHR33133:SF1 | UniProt:Q9LQY7 |
| TMHMM:TMhelix | UniParc:UPI00000A8DF0 | SEG:seg | : | : | : |
Description
Son of sevenless protein [Source:UniProtKB/TrEMBL;Acc:Q9LQY7]
Coordinates
chr1:+:9210051..9211588
Molecular Weight (calculated)
37019.0 Da
IEP (calculated)
7.877
GRAVY (calculated)
0.736
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: METETNQVLR KPELKSYSHK QFHSSNALEI LRETVRILRY NLGALMLTTA VLICPVSALL LPNFLVDQSL VNKLTVKLLL VAKSSGLPLQ PFVKHSCQKF
101: AETAVSSAMC FPVFITVSLL SKAAVVYSVD CSYSREVVDI SKFLVILQKI WRRVVFTYVW ICILIVGCFT FFCVLLVAIC SSFSVLGFSP DFNVYGAMLV
201: GLAFSVVFAN AIIICNTAIV ISVLEDVSGL GALMRASDLI KGQIQVGLLM FLGSTLGLAF VEGLFDHRVK KVSYGDGSSR LWEGPLLVLM YSFVTLIDSM
301: MSAVFYFSCR VYYSMEASRG ETQPIMETVT VVDAE
101: AETAVSSAMC FPVFITVSLL SKAAVVYSVD CSYSREVVDI SKFLVILQKI WRRVVFTYVW ICILIVGCFT FFCVLLVAIC SSFSVLGFSP DFNVYGAMLV
201: GLAFSVVFAN AIIICNTAIV ISVLEDVSGL GALMRASDLI KGQIQVGLLM FLGSTLGLAF VEGLFDHRVK KVSYGDGSSR LWEGPLLVLM YSFVTLIDSM
301: MSAVFYFSCR VYYSMEASRG ETQPIMETVT VVDAE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.