Factsheet for VIT_01s0113g00470.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0028g02240.t01
VIT_18s0001g09830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26650.1	VIT_12s0028g02240.t01	AT2G42580.1	19000166
AT1G26650.1	VIT_18s0001g09830.t01	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004384.1-P	Field mustard	extracellular, plasma membrane, vacuole	60.23	65.93
CDX95932	Canola	extracellular, plasma membrane, vacuole	60.23	65.93
CDY40929	Canola	extracellular, plasma membrane, vacuole	59.65	65.3
KRH50552	Soybean	plasma membrane	66.57	64.71
KRG89547	Soybean	plasma membrane	67.15	64.54
AT1G26650.1	Thale cress	plasma membrane	61.38	63.58
PGSC0003DMT400068981	Potato	nucleus, peroxisome, plasma membrane	65.13	62.26
Solyc05g012870.1.1	Tomato	cytosol, nucleus, plasma membrane	63.69	62.25
Solyc01g010990.2.1	Tomato	peroxisome	64.84	61.98
PGSC0003DMT400072841	Potato	cytosol, nucleus, plasma membrane	63.69	61.73
AT1G69430.1	Thale cress	plastid	61.96	61.43
CDX85037	Canola	plasma membrane	57.93	59.82
Bra024700.1-P	Field mustard	cytosol, peroxisome, plasma membrane	57.64	59.52
CDY16174	Canola	plasma membrane	57.64	59.52
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, vacuole	42.36	54.04
EER97483	Sorghum	cytosol, extracellular, plasma membrane	44.96	47.13
Zm00001d022037_P001	Maize	plasma membrane	44.38	46.53
TraesCS2D01G191100.1	Wheat	plasma membrane	44.38	46.53
TraesCS2B01G209900.1	Wheat	plasma membrane	44.38	46.53
TraesCS2A01G183300.1	Wheat	plasma membrane	44.38	46.53
Os07t0595900-01	Rice	endoplasmic reticulum, plasma membrane	40.92	46.41
VIT_11s0016g04110.t01	Wine grape	plasma membrane	23.92	27.57
VIT_17s0000g06630.t01	Wine grape	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	21.61	23.01
VIT_14s0108g01250.t01	Wine grape	plasma membrane	18.44	19.75

Protein Annotations

ArrayExpress:VIT_01s0113g00470	EMBL:FN595240	EnsemblPlants:VIT_01s0113g00470.t01	EnsemblPlantsGene:VIT_01s0113g00470	EntrezGene:100248804	EntrezGene:LOC100248804
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR33133	PANTHER:PTHR33133:SF1	ProteinID:CCB47611
ProteinID:CCB47611.1	RefSeq:XP_002267888	RefSeq:XP_002267888.1	SEG:seg	TMHMM:TMhelix	unigene:Vvi.21684
UniParc:UPI00015CC48B	UniProt:F6H5X2	wikigene:100248804	wikigene:LOC100248804	MapMan:35.2	:

Description

No Description!

Coordinates

chr1:+:13783130..13784481

Molecular Weight (calculated)

38096.5 Da

IEP (calculated)

8.241

GRAVY (calculated)

0.752

Length

347 amino acids

Sequence
(BLAST)

001: MEASRTPKAG SLERVVHGLE LEPYDYSNGT GSAGSDPMNA LQILRETVWI LRYNSSGFML IAALLICPVS ALLLSNVLVD QSIVKRLSIR LLLVARSSGL
101: PLRPFIKQSC QKFSEMAISA ATCFPLYFTI SLLSKAAVVY SVDCSYSRKK FDSSKFYVIV VKIWRRLVST YLWVCMLIVS CLTVFLVTLI AVCNVFLIIG
201: FPGDLIVYAA IMVGLIFSVV FAKAIIICNI AIVICVLEEV SGPQALLRSG VLIKGQTQVG LLIFLGSTIG MAFVEGLFEH RVKTLSYGDG SSRVWEGPLL
301: VVMYSFVVLI DSMMSAVFYF SCRSSSREAL DGEIHPILET PASMDIQ

Best Arabidopsis Sequence Match ( AT1G26650.1 )
(BLAST)

001: METETNQVLR KPELKSYSHK QFHSSNALEI LRETVRILRY NLGALMLTTA VLICPVSALL LPNFLVDQSL VNKLTVKLLL VAKSSGLPLQ PFVKHSCQKF
101: AETAVSSAMC FPVFITVSLL SKAAVVYSVD CSYSREVVDI SKFLVILQKI WRRVVFTYVW ICILIVGCFT FFCVLLVAIC SSFSVLGFSP DFNVYGAMLV
201: GLAFSVVFAN AIIICNTAIV ISVLEDVSGL GALMRASDLI KGQIQVGLLM FLGSTLGLAF VEGLFDHRVK KVSYGDGSSR LWEGPLLVLM YSFVTLIDSM
301: MSAVFYFSCR VYYSMEASRG ETQPIMETVT VVDAE

Arabidopsis Description

Son of sevenless protein [Source:UniProtKB/TrEMBL;Acc:Q9LQY7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.