Factsheet for VIT_17s0000g06630.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, plastid, plasma membrane

Predictor Summary:

plastid 2
mitochondrion 2
endoplasmic reticulum 2
plasma membrane 3
extracellular 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, mitochondrion, plasma membrane, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54594	Soybean	extracellular, mitochondrion, plasma membrane, plastid	60.12	59.76
KRH03520	Soybean	plastid	58.9	59.26
KRH63289	Soybean	extracellular, mitochondrion, plasma membrane, plastid	59.51	59.15
KRH56883	Soybean	plasma membrane	59.51	54.34
PGSC0003DMT400063407	Potato	vacuole	53.68	52.24
Solyc03g115690.1.1	Tomato	plasma membrane	52.45	51.51
Solyc06g069680.1.1	Tomato	plasma membrane	51.23	50.0
VIT_14s0108g01250.t01	Wine grape	plasma membrane	48.16	48.46
CDY02155	Canola	extracellular, peroxisome, plasma membrane	47.85	48.15
Bra012967.1-P	Field mustard	extracellular, mitochondrion, peroxisome, plasma membrane	47.55	47.84
CDY23069	Canola	plasma membrane	47.55	47.84
CDY16815	Canola	extracellular, peroxisome, plasma membrane, plastid	46.32	47.34
Bra035935.1-P	Field mustard	extracellular, peroxisome, plasma membrane, plastid	46.32	47.34
GSMUA_Achr9P26820_001	Banana	plasma membrane	46.01	46.3
GSMUA_Achr9P09480_001	Banana	mitochondrion, plasma membrane	44.17	45.57
CDX87208	Canola	extracellular, peroxisome, plasma membrane, plastid	44.48	45.31
GSMUA_Achr6P24000_001	Banana	mitochondrion	42.02	43.77
AT5G61340.2	Thale cress	cytosol, peroxisome, plasma membrane	47.55	43.18
GSMUA_Achr1P24470_001	Banana	endoplasmic reticulum, plasma membrane	38.04	41.89
TraesCS5A01G105000.1	Wheat	plasma membrane	37.73	39.05
TraesCS5A01G075600.1	Wheat	mitochondrion	40.49	38.94
Zm00001d041518_P001	Maize	mitochondrion	40.49	38.71
EES16218	Sorghum	mitochondrion	40.49	38.71
TraesCS5B01G081900.1	Wheat	mitochondrion	40.18	38.64
TraesCS5B01G108400.1	Wheat	mitochondrion, plastid	37.12	38.53
TraesCS5D01G116000.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	37.12	38.53
HORVU5Hr1G028310.1	Barley	plastid	38.65	38.41
TraesCS5D01G089200.1	Wheat	mitochondrion	39.88	38.24
Os12t0577200-01	Rice	mitochondrion, plastid	39.88	37.04
Zm00001d030775_P001	Maize	mitochondrion, plastid	38.04	36.47
Os12t0507400-00	Rice	mitochondrion	36.5	36.28
Zm00001d035322_P001	Maize	mitochondrion	35.58	33.53
KXG23542	Sorghum	mitochondrion, plastid	35.58	33.43
VIT_11s0016g04110.t01	Wine grape	plasma membrane	23.62	25.58
GSMUA_Achr3P18800_001	Banana	plastid	20.86	22.82
VIT_01s0113g00470.t01	Wine grape	plasma membrane	23.01	21.61

Protein Annotations

EntrezGene:100260477	wikigene:100260477	MapMan:35.2	EMBL:AM431362	ProteinID:CAN78131	ProteinID:CAN78131.1
ProteinID:CCB43065	ProteinID:CCB43065.1	UniProt:F6GT56	EMBL:FN594950	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	EntrezGene:LOC100260477	wikigene:LOC100260477	PANTHER:PTHR33133	PANTHER:PTHR33133:SF3	TMHMM:TMhelix
UniParc:UPI000198522C	ArrayExpress:VIT_17s0000g06630	EnsemblPlantsGene:VIT_17s0000g06630	EnsemblPlants:VIT_17s0000g06630.t01	RefSeq:XP_002284698	RefSeq:XP_002284698.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr17:+:7160954..7162263

Molecular Weight (calculated)

36021.5 Da

IEP (calculated)

9.067

GRAVY (calculated)

0.646

Length

326 amino acids

Sequence
(BLAST)

001: MERTGRIMRR SVYTFLQQYQ FFTSTAALLV LPFSASILLS QAFLPFSSPL LPVIHDRLQF LFKAAGFPPS SQFFTILNLK LSQTISSSIF TLPFTISFLL
101: IGKACIIQAL NHNKPGFPPS FSSFISLYCP LLITYIWNSL LILSANATAF SVLFIAFNCL EGLGYSSPNF VPFLSAAAAI LYSIILANSL IICNLALVLS
201: GMERCGGYIA ILKACVMIRG RTSTALSLAL PINLALAAVE ALFQYRVVRA YHISGKPRSS IALEGLFIAY MYSILVVLDT IVSCIFFKRC KRGCWTDQDG
301: THSYRIEIAE EGGKAFENTR ISEELP

Best Arabidopsis Sequence Match ( AT5G61340.2 )
(BLAST)

001: MTCIEKTLSR FGGSFKKHTY SNFSKEKKIA KTRMKKTMED PSKIMRRSIH TFLQNYHRVT TAAAVALPFS AGLLLSQPFF SSSSSTLHMR LNMLFRGAGF
101: SSSHDFFNIL SLKLSQTLSS SLFTLPFSLT FLLLSKAYVI KLLSNNHSAD SSSVFYLRLL KTYVCNFFFL LSANASAFAL FFLAYNTLEA FGFSSRNFYT
201: FLSLSSAIIY SIIIANAFVI SNLALVSSPS SSSGGYTNIL KACLLIRGRN STAMALALPT NLGLAGVEAL FQYRVMRSYY NGDRDIISIA LEGTFIAYLY
301: ALFLVLDTIV NFLFYQSCIK NEEDQNIGRE DEYSIKIQIS ETENTKIHIK GSKNLQEIL

Arabidopsis Description

Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q9FLJ9]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.