Factsheet for Zm00001d041518_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, peroxisome, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16218	Sorghum	mitochondrion	88.27	88.27
Zm00001d030775_P001	Maize	mitochondrion, plastid	81.52	81.76
TraesCS5A01G075600.1	Wheat	mitochondrion	73.31	73.75
TraesCS5D01G089200.1	Wheat	mitochondrion	71.55	71.76
TraesCS5B01G081900.1	Wheat	mitochondrion	70.38	70.8
Os12t0577200-01	Rice	mitochondrion, plastid	72.73	70.66
GSMUA_Achr9P26820_001	Banana	plasma membrane	45.45	47.84
GSMUA_Achr9P09480_001	Banana	mitochondrion, plasma membrane	43.11	46.52
Zm00001d035322_P001	Maize	mitochondrion	41.94	41.33
VIT_17s0000g06630.t01	Wine grape	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	38.71	40.49
KRH54594	Soybean	extracellular, mitochondrion, plasma membrane, plastid	38.12	39.63
KRH63289	Soybean	extracellular, mitochondrion, plasma membrane, plastid	37.54	39.02
KRH03520	Soybean	plastid	35.48	37.35
CDY16815	Canola	extracellular, peroxisome, plasma membrane, plastid	33.72	36.05
Bra035935.1-P	Field mustard	extracellular, peroxisome, plasma membrane, plastid	33.43	35.74
KRH56883	Soybean	plasma membrane	36.95	35.29
CDY23069	Canola	plasma membrane	33.14	34.88
Bra012967.1-P	Field mustard	extracellular, mitochondrion, peroxisome, plasma membrane	33.14	34.88
CDX87208	Canola	extracellular, peroxisome, plasma membrane, plastid	32.55	34.69
CDY02155	Canola	extracellular, peroxisome, plasma membrane	32.84	34.57
Solyc03g115690.1.1	Tomato	plasma membrane	32.26	33.13
AT5G61340.2	Thale cress	cytosol, peroxisome, plasma membrane	34.6	32.87
PGSC0003DMT400063407	Potato	vacuole	31.96	32.54
Solyc06g069680.1.1	Tomato	plasma membrane	31.38	32.04
VIT_14s0108g01250.t01	Wine grape	plasma membrane	28.74	30.25
Zm00001d022037_P001	Maize	plasma membrane	22.58	23.26

Protein Annotations

EMBL:EU968548	EnsemblPlants:Zm00001d041518_P001	EnsemblPlants:Zm00001d041518_T001	EnsemblPlantsGene:Zm00001d041518	EntrezGene:100277421	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR33133	PANTHER:PTHR33133:SF3	ProteinID:ONM33195.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI000182E23D	UniProt:B6TU83	MapMan:35.2	:	:

Description

Expressed protein; protein

Coordinates

chr3:-:125560575..125561600

Molecular Weight (calculated)

35468.7 Da

IEP (calculated)

9.651

GRAVY (calculated)

0.729

Length

341 amino acids

Sequence
(BLAST)

001: MGRAAGLARD GVTTAGRATT TRVMRAAVSA FFAGYHRFTS VAALLALPFS AAVLASEAMA PSSWALRAVA ARLRSVFAAA GFPPSPFFAL LEAKLSQTVF
101: TFAATLPFAL TFLLLAKACV AAMLRLRDDD ASESPPPRRR RVAVAALPPC AAVARAYPAV VATHLLNAFL MLSANAAVFS LLLLAFGAAD LLGLTSHVWT
201: LALSAAGAIV YSLVVGVATV VCNLAIVVAA TEPGCAGHAA VLRACVAIRG RVSTALALAL PTNLGMAAAE ALFGLRVVAQ RRRDGRLAPG VAGEAFSIAY
301: IHAICVVLEI IVTCMFYRSC KRSEADELRE LEPEEKGDLQ A

Best Arabidopsis Sequence Match ( AT5G61340.1 )
(BLAST)

001: MKKTMEDPSK IMRRSIHTFL QNYHRVTTAA AVALPFSAGL LLSQPFFSSS SSTLHMRLNM LFRGAGFSSS HDFFNILSLK LSQTLSSSLF TLPFSLTFLL
101: LSKAYVIKLL SNNHSADSSS VFYLRLLKTY VCNFFFLLSA NASAFALFFL AYNTLEAFGF SSRNFYTFLS LSSAIIYSII IANAFVISNL ALVSSPSSSS
201: GGYTNILKAC LLIRGRNSTA MALALPTNLG LAGVEALFQY RVMRSYYNGD RDIISIALEG TFIAYLYALF LVLDTIVNFL FYQSCIKNEE DQNIGREDEY
301: SIKIQISETE NTKIHIKGSK NLQEIL

Arabidopsis Description

Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q9FLJ9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.