Factsheet for TraesCS5B01G081900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G089200.1	Wheat	mitochondrion	94.99	94.71
TraesCS5A01G075600.1	Wheat	mitochondrion	92.33	92.33
EES16218	Sorghum	mitochondrion	73.16	72.73
Zm00001d041518_P001	Maize	mitochondrion	70.8	70.38
Zm00001d030775_P001	Maize	mitochondrion, plastid	69.91	69.71
Os12t0577200-01	Rice	mitochondrion, plastid	71.68	69.23
GSMUA_Achr9P26820_001	Banana	plasma membrane	45.72	47.84
GSMUA_Achr9P09480_001	Banana	mitochondrion, plasma membrane	42.48	45.57
TraesCS5B01G108400.1	Wheat	mitochondrion, plastid	41.89	45.22
VIT_17s0000g06630.t01	Wine grape	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	38.64	40.18
KRH63289	Soybean	extracellular, mitochondrion, plasma membrane, plastid	38.35	39.63
KRH54594	Soybean	extracellular, mitochondrion, plasma membrane, plastid	38.35	39.63
KRH03520	Soybean	plastid	36.58	38.27
KRH56883	Soybean	plasma membrane	38.35	36.41
CDY16815	Canola	extracellular, peroxisome, plasma membrane, plastid	33.92	36.05
Bra035935.1-P	Field mustard	extracellular, peroxisome, plasma membrane, plastid	33.63	35.74
CDY23069	Canola	plasma membrane	33.63	35.19
Bra012967.1-P	Field mustard	extracellular, mitochondrion, peroxisome, plasma membrane	33.33	34.88
CDY02155	Canola	extracellular, peroxisome, plasma membrane	33.04	34.57
CDX87208	Canola	extracellular, peroxisome, plasma membrane, plastid	32.45	34.38
Solyc03g115690.1.1	Tomato	plasma membrane	32.74	33.43
Solyc06g069680.1.1	Tomato	plasma membrane	32.45	32.93
AT5G61340.2	Thale cress	cytosol, peroxisome, plasma membrane	34.81	32.87
PGSC0003DMT400063407	Potato	vacuole	32.45	32.84
VIT_14s0108g01250.t01	Wine grape	plasma membrane	29.2	30.56
TraesCS2B01G209900.1	Wheat	plasma membrane	22.71	23.26

Protein Annotations

EnsemblPlants:TraesCS5B01G081900.1	EnsemblPlantsGene:TraesCS5B01G081900	PANTHER:PTHR33133	PANTHER:PTHR33133:SF3	SEG:seg	TMHMM:TMhelix
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:102606084..102607418

Molecular Weight (calculated)

34938.9 Da

IEP (calculated)

10.225

GRAVY (calculated)

0.617

Length

339 amino acids

Sequence
(BLAST)

001: MVRRGGLLTG GYGGASSWKA GRVMRAAVAA FFNGYHCFSP VAAMLALPFS AAVLASQAAA SSSSSSSGAV LPGVSSRLRG MFHAAGFPPS PFFALLNGKL
101: SQTVFTYAAT LPAALTVLLL AKACVAGVLR ADPAHDRRRR GRMSLPPCGA VARAYPALAA THLVGSFVML SANAAAFSLL FLAFGAADLL GFTSRASTLA
201: LSAAGAIAYS VAVGVATVVC NLAVVVAAME ERCAGQAAVL RACVLIRGRV PTALALALPT NLGMAAAEAL FQLRVVSQRR KAGRLAPGVA GEAFSIAYIH
301: ALCVVLEIII SCMFYRSCRR SEADELRELE PEEKGDLQA

Best Arabidopsis Sequence Match ( AT5G61340.1 )
(BLAST)

001: MKKTMEDPSK IMRRSIHTFL QNYHRVTTAA AVALPFSAGL LLSQPFFSSS SSTLHMRLNM LFRGAGFSSS HDFFNILSLK LSQTLSSSLF TLPFSLTFLL
101: LSKAYVIKLL SNNHSADSSS VFYLRLLKTY VCNFFFLLSA NASAFALFFL AYNTLEAFGF SSRNFYTFLS LSSAIIYSII IANAFVISNL ALVSSPSSSS
201: GGYTNILKAC LLIRGRNSTA MALALPTNLG LAGVEALFQY RVMRSYYNGD RDIISIALEG TFIAYLYALF LVLDTIVNFL FYQSCIKNEE DQNIGREDEY
301: SIKIQISETE NTKIHIKGSK NLQEIL

Arabidopsis Description

Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q9FLJ9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.