CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, extracellular, plasma membrane

Predictor Summary:

plastid 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16815	Canola	extracellular, peroxisome, plasma membrane, plastid	93.44	93.73
CDY23069	Canola	plasma membrane	80.62	79.63
CDY02155	Canola	extracellular, peroxisome, plasma membrane	78.75	77.78
AT5G61340.2	Thale cress	cytosol, peroxisome, plasma membrane	80.62	71.87
KRH63289	Soybean	extracellular, mitochondrion, plasma membrane, plastid	47.5	46.34
KRH03520	Soybean	plastid	45.31	44.75
KRH54594	Soybean	extracellular, mitochondrion, plasma membrane, plastid	45.62	44.51
VIT_17s0000g06630.t01	Wine grape	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	45.31	44.48
KRH56883	Soybean	plasma membrane	45.0	40.34
PGSC0003DMT400063407	Potato	vacuole	39.69	37.91
Solyc06g069680.1.1	Tomato	plasma membrane	39.06	37.43
Solyc03g115690.1.1	Tomato	plasma membrane	38.44	37.05
GSMUA_Achr9P26820_001	Banana	plasma membrane	37.19	36.73
GSMUA_Achr9P09480_001	Banana	mitochondrion, plasma membrane	36.25	36.71
GSMUA_Achr6P24000_001	Banana	mitochondrion	35.31	36.1
TraesCS5D01G116000.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	34.06	34.71
TraesCS5A01G105000.1	Wheat	plasma membrane	34.06	34.6
TraesCS5B01G108400.1	Wheat	mitochondrion, plastid	33.75	34.39
VIT_14s0108g01250.t01	Wine grape	plasma membrane	34.69	34.26
TraesCS5A01G075600.1	Wheat	mitochondrion	35.31	33.33
GSMUA_Achr1P24470_001	Banana	endoplasmic reticulum, plasma membrane	30.62	33.11
HORVU5Hr1G028310.1	Barley	plastid	33.44	32.62
Zm00001d041518_P001	Maize	mitochondrion	34.69	32.55
EES16218	Sorghum	mitochondrion	34.69	32.55
TraesCS5B01G081900.1	Wheat	mitochondrion	34.38	32.45
TraesCS5D01G089200.1	Wheat	mitochondrion	34.38	32.35
Zm00001d030775_P001	Maize	mitochondrion, plastid	34.06	32.06
Os12t0577200-01	Rice	mitochondrion, plastid	33.44	30.48
KXG23542	Sorghum	mitochondrion, plastid	32.81	30.26
Os12t0507400-00	Rice	mitochondrion	30.62	29.88
Zm00001d035322_P001	Maize	mitochondrion	31.88	29.48
CDY40929	Canola	extracellular, plasma membrane, vacuole	21.88	22.08
CDX95932	Canola	extracellular, plasma membrane, vacuole	21.88	22.08
CDX85037	Canola	plasma membrane	22.19	21.13
CDY16174	Canola	plasma membrane	21.88	20.83
GSMUA_Achr3P18800_001	Banana	plastid	19.38	20.81

Protein Annotations

EnsemblPlants:CDX87208	EnsemblPlantsGene:GSBRNA2T00146140001	GO:A0A078DIU7	PANTHER:PTHR33133	PANTHER:PTHR33133:SF3	ProteinID:CDX87208
ProteinID:CDX87208.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EB923C	MapMan:35.2	:

Description

BnaC09g05230D

Coordinates

chrLK031849:-:1175435..1176397

Molecular Weight (calculated)

35421.0 Da

IEP (calculated)

9.262

GRAVY (calculated)

0.446

Length

320 amino acids

Sequence
(BLAST)

001: MKKTMEDPSK IMRRSIHTFL QHYHRATTAA AVALPFSTAL FLSQPFFSSS SSSIHMKLNT LFRGAGFSSS LGFFNILSLK LSQTLSSSLL TLPFSLTFLL
101: FSKAYIIKLL SNNHDSSVYY FRILKTCICN SFFLLSANAS AFALFFLAST ILDSLGFSSR NFYTLFSLSS ALIYSIILAN AFVISNLALV SSPSSSSGGY
201: TTLLKACLLL HGRTSTALAL ALPTNLGLAG VEALFRYRVM RSFYKGDRDV AWIAIEGTLI AYLYALFLVL DTVVNFFFYQ SCVENEEEQK IGGDDEYSIK
301: IQICESDNTK ICIKGPKSLF

Best Arabidopsis Sequence Match ( AT5G61340.1 )
(BLAST)

001: MKKTMEDPSK IMRRSIHTFL QNYHRVTTAA AVALPFSAGL LLSQPFFSSS SSTLHMRLNM LFRGAGFSSS HDFFNILSLK LSQTLSSSLF TLPFSLTFLL
101: LSKAYVIKLL SNNHSADSSS VFYLRLLKTY VCNFFFLLSA NASAFALFFL AYNTLEAFGF SSRNFYTFLS LSSAIIYSII IANAFVISNL ALVSSPSSSS
201: GGYTNILKAC LLIRGRNSTA MALALPTNLG LAGVEALFQY RVMRSYYNGD RDIISIALEG TFIAYLYALF LVLDTIVNFL FYQSCIKNEE DQNIGREDEY
301: SIKIQISETE NTKIHIKGSK NLQEIL

Arabidopsis Description

Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q9FLJ9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.