Factsheet for PGSC0003DMT400063407

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

plastid 2
mitochondrion 1
vacuole 3
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g115690.1.1	Tomato	plasma membrane	91.34	92.17
VIT_17s0000g06630.t01	Wine grape	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	52.24	53.68
KRH54594	Soybean	extracellular, mitochondrion, plasma membrane, plastid	48.66	49.7
KRH03520	Soybean	plastid	48.06	49.69
KRH63289	Soybean	extracellular, mitochondrion, plasma membrane, plastid	48.06	49.09
KRH56883	Soybean	plasma membrane	48.66	45.66
Bra012967.1-P	Field mustard	extracellular, mitochondrion, peroxisome, plasma membrane	40.6	41.98
CDY02155	Canola	extracellular, peroxisome, plasma membrane	40.3	41.67
CDY16815	Canola	extracellular, peroxisome, plasma membrane, plastid	39.4	41.38
Bra035935.1-P	Field mustard	extracellular, peroxisome, plasma membrane, plastid	38.81	40.75
CDY23069	Canola	plasma membrane	39.4	40.74
GSMUA_Achr1P24470_001	Banana	endoplasmic reticulum, plasma membrane	35.52	40.2
GSMUA_Achr9P09480_001	Banana	mitochondrion, plasma membrane	37.61	39.87
CDX87208	Canola	extracellular, peroxisome, plasma membrane, plastid	37.91	39.69
GSMUA_Achr6P24000_001	Banana	mitochondrion	37.01	39.62
GSMUA_Achr9P26820_001	Banana	plasma membrane	37.91	39.2
AT5G61340.2	Thale cress	cytosol, peroxisome, plasma membrane	40.0	37.33
TraesCS5D01G116000.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	31.34	33.44
TraesCS5A01G105000.1	Wheat	plasma membrane	31.34	33.33
TraesCS5B01G108400.1	Wheat	mitochondrion, plastid	31.04	33.12
EES16218	Sorghum	mitochondrion	33.13	32.55
TraesCS5A01G075600.1	Wheat	mitochondrion	32.84	32.45
TraesCS5B01G081900.1	Wheat	mitochondrion	32.84	32.45
Zm00001d030775_P001	Maize	mitochondrion, plastid	32.84	32.35
HORVU5Hr1G028310.1	Barley	plastid	31.64	32.32
TraesCS5D01G089200.1	Wheat	mitochondrion	32.54	32.06
Zm00001d041518_P001	Maize	mitochondrion	32.54	31.96
Os12t0507400-00	Rice	mitochondrion	30.75	31.4
Os12t0577200-01	Rice	mitochondrion, plastid	32.84	31.34
Zm00001d035322_P001	Maize	mitochondrion	29.55	28.61
KXG23542	Sorghum	mitochondrion, plastid	29.25	28.24
PGSC0003DMT400068981	Potato	nucleus, peroxisome, plasma membrane	23.88	22.04
PGSC0003DMT400072841	Potato	cytosol, nucleus, plasma membrane	22.99	21.51
GSMUA_Achr3P18800_001	Banana	plastid	19.1	21.48

Protein Annotations

EnsemblPlants:PGSC0003DMT400063407	EnsemblPlantsGene:PGSC0003DMG400024664	EntrezGene:107060149	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR33133	PANTHER:PTHR33133:SF3	PGSC:PGSC0003DMG400024664	RefSeq:XP_015163138.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI000296193D	UniProt:M1CAM5	MapMan:35.2	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400024664]

Coordinates

chr3:-:55531876..55533324

Molecular Weight (calculated)

37500.0 Da

IEP (calculated)

6.957

GRAVY (calculated)

0.660

Length

335 amino acids

Sequence
(BLAST)

001: METYSSVPME KTTKIIRKSI FIFLQNYQFF TTTTAFFAFP FAASVLLLQS FIYSSSLYPV IYERLHLLFD AAGFPSSSEF FTLLNSKISQ TISISFLAFP
101: FTISFFLFAK SLVIESLNYS KPSQKTTFPS YFNLLVTQFC NSLLIISANA TCFTLLFFGF NLFDYGFGLS NPRSILLLSA TGAVLCSIIL ANTLIICNLA
201: LVISGNEKIG GYMAILKSCV LIRGRTATAL SLAVPVNLAL AAVEALFQYR IVKAYYQEKT ELFTLALEGM FIAYIYSVLL VLDTIASCVF YKSCKTEEEG
301: VFPILPFSSI STYQDDIQDR DQCIVVKIKT LEEFC

Best Arabidopsis Sequence Match ( AT5G61340.1 )
(BLAST)

001: MKKTMEDPSK IMRRSIHTFL QNYHRVTTAA AVALPFSAGL LLSQPFFSSS SSTLHMRLNM LFRGAGFSSS HDFFNILSLK LSQTLSSSLF TLPFSLTFLL
101: LSKAYVIKLL SNNHSADSSS VFYLRLLKTY VCNFFFLLSA NASAFALFFL AYNTLEAFGF SSRNFYTFLS LSSAIIYSII IANAFVISNL ALVSSPSSSS
201: GGYTNILKAC LLIRGRNSTA MALALPTNLG LAGVEALFQY RVMRSYYNGD RDIISIALEG TFIAYLYALF LVLDTIVNFL FYQSCIKNEE DQNIGREDEY
301: SIKIQISETE NTKIHIKGSK NLQEIL

Arabidopsis Description

Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q9FLJ9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.