CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
extracellular 2
golgi 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01073
EES02247
OQU78515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26650.1	EES01073	AT2G42580.1	19000166
AT1G26650.1	EES02247	AT2G42580.1	19000166
AT1G26650.1	OQU78515	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022037_P001	Maize	plasma membrane	95.47	95.47
TraesCS2A01G183300.1	Wheat	plasma membrane	84.59	84.59
TraesCS2B01G209900.1	Wheat	plasma membrane	84.29	84.29
TraesCS2D01G191100.1	Wheat	plasma membrane	83.69	83.69
Os07t0595900-01	Rice	endoplasmic reticulum, plasma membrane	77.34	83.66
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, vacuole	43.81	53.31
Bra004384.1-P	Field mustard	extracellular, plasma membrane, vacuole	47.43	49.53
CDX95932	Canola	extracellular, plasma membrane, vacuole	47.43	49.53
CDY40929	Canola	extracellular, plasma membrane, vacuole	47.43	49.53
VIT_01s0113g00470.t01	Wine grape	plasma membrane	47.13	44.96
KRH50552	Soybean	plasma membrane	48.04	44.54
KRG89547	Soybean	plasma membrane	48.04	44.04
AT1G69430.1	Thale cress	plastid	46.53	44.0
AT1G26650.1	Thale cress	plasma membrane	44.11	43.58
CDX85037	Canola	plasma membrane	43.2	42.56
CDY16174	Canola	plasma membrane	42.9	42.26
Bra024700.1-P	Field mustard	cytosol, peroxisome, plasma membrane	42.6	41.96
Solyc05g012870.1.1	Tomato	cytosol, nucleus, plasma membrane	43.81	40.85
PGSC0003DMT400072841	Potato	cytosol, nucleus, plasma membrane	43.5	40.22
PGSC0003DMT400068981	Potato	nucleus, peroxisome, plasma membrane	43.81	39.94
Solyc01g010990.2.1	Tomato	peroxisome	42.9	39.12
EES16218	Sorghum	mitochondrion	24.17	23.46
KXG23542	Sorghum	mitochondrion, plastid	22.96	21.9

Protein Annotations

EnsemblPlants:EER97483	EnsemblPlantsGene:SORBI_3002G362600	EntrezGene:8078995	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR33133	PANTHER:PTHR33133:SF1	ProteinID:EER97483	ProteinID:EER97483.1	RefSeq:XP_002460962.1	SEG:seg
TMHMM:TMhelix	unigene:Sbi.8829	UniParc:UPI0001A8383D	UniProt:C5XD72	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr2:+:72367355..72369988

Molecular Weight (calculated)

34947.7 Da

IEP (calculated)

8.064

GRAVY (calculated)

0.861

Length

331 amino acids

Sequence
(BLAST)

001: MAPTRGAGGG VRLPPMNAME ILRETVRVLR GDPHAFTSIL FLLLCPASGC LLLSAAALDG TVVVPLARRL LVAAATSGLP LTHFVRQLAH HLAATLVSAV
101: VSLPALLTLL LAARAAVAYT VAAVYAGKPL AAGDIILLAR RAWPRLAATY ALACAAVAAG LVAFLALLVT ACSTLRALLY PPDIVVCAGL FTVLAYSVVY
201: AHTIIICNLG GVIAVLEEVA GVNALRRSVQ LMRGQTHVGL LIFLGSTIGL AFVEGLFEHR VKTLSYGDGS SRLWEGPLLV LMYSFVMLID SMMSAVFYFT
301: CRSSNLDFLD EEGGSVEELE MMRAGNLDAI R

Best Arabidopsis Sequence Match ( AT1G69430.1 )
(BLAST)

001: MEMGLSGMMN HGGSNSKLRK FEIESSSSSP SSSSDHKFHS MNALEILRET VRILRYNLGA FMLIALLLIC PVSAILLPNL LVDQSVVNSL TVRLLLVSKS
101: SGLPLLPFVR NSCQKFSETA VSSAMCFPLF ITLSLLSRAA VVYSVDCTYS RKKVVVTKFV VIMQRLWKRL VITYLWICTV IVVCLTSFCV FLVAVCSSFY
201: VLGFSPDFNA YGAILVGLVF SVVFANAIII CNTTIVISIL EDVSGPGALV RASDLIKGQT QVGLLIFLGS TIGLTFVEGL FEHRVKSLSY GDGSSRLWEG
301: PLLVVMYSFV VLIDTMMSAV FYFSCRSYSM EAVEALEASG EIVSQDLSLL

Arabidopsis Description

Son of sevenless protein [Source:UniProtKB/TrEMBL;Acc:Q9C794]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.