Factsheet for GSMUA_Achr4P09390_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P25160_001
GSMUA_Achr4P08560_001
GSMUA_Achr7P24480_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62120.1	GSMUA_Achr10P...	AT2G42580.1	19000166
AT3G62120.1	GSMUA_Achr3P25160_001	AT2G42580.1	19000166
AT3G62120.1	GSMUA_Achr4P08560_001	AT2G42580.1	19000166
AT3G62120.1	GSMUA_Achr7P24480_001	AT2G42580.1	19000166
AT3G62120.1	GSMUA_AchrUn_...	AT2G42580.1	19000166
AT3G62120.1	GSMUA_AchrUn_...	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P28360_001	Banana	cytosol	18.73	88.03
PGSC0003DMT400036645	Potato	cytosol	74.36	81.31
VIT_07s0005g02620.t01	Wine grape	cytosol	76.0	81.01
KRG96602	Soybean	cytosol	75.82	80.97
Solyc03g117330.2.1	Tomato	cytosol	74.0	80.75
TraesCS3B01G455000.1	Wheat	cytosol, extracellular, golgi	74.0	80.59
PGSC0003DMT400073336	Potato	cytosol	75.45	80.58
Solyc06g068320.2.1	Tomato	cytosol, extracellular, nucleus	75.27	80.39
TraesCS3D01G415200.1	Wheat	cytosol, golgi	73.64	80.2
KRH68339	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	75.09	80.19
TraesCS1B01G342200.1	Wheat	cytosol, golgi	73.45	80.0
TraesCS3A01G419600.1	Wheat	cytosol	73.27	79.8
Zm00001d053196_P001	Maize	cytosol	73.64	79.72
EES15248	Sorghum	cytosol	73.64	79.72
Bra007663.1-P	Field mustard	cytosol	74.18	79.53
EES19704	Sorghum	cytosol	73.45	79.53
HORVU3Hr1G093050.2	Barley	cytosol	74.0	79.34
Os12t0443700-01	Rice	cytosol	73.45	79.22
CDX76618	Canola	cytosol	74.0	79.03
TraesCS1D01G210600.3	Wheat	cytosol	73.45	78.75
HORVU4Hr1G079480.1	Barley	cytosol	4.91	77.14
Bra003487.1-P	Field mustard	cytosol	70.0	77.0
AT3G62120.1	Thale cress	cytosol	74.18	76.98
CDX67878	Canola	cytosol	73.64	74.72
CDY25092	Canola	cytosol	73.27	74.63
TraesCS7A01G200500.1	Wheat	cytosol	65.45	73.32
Zm00001d002585_P004	Maize	cytosol	69.64	73.23
TraesCS7B01G107300.1	Wheat	cytosol	65.64	73.23
CDY11404	Canola	cytosol, mitochondrion, plastid, vacuole	74.36	73.17
TraesCS7D01G203800.1	Wheat	cytosol	65.09	72.91
Bra003486.1-P	Field mustard	cytosol	61.09	72.89
HORVU7Hr1G041110.1	Barley	cytosol	64.0	70.54
CDX67877	Canola	cytosol	54.55	68.65
CDY30248	Canola	cytosol	17.64	66.9
CDY25091	Canola	cytosol	51.64	64.99
KRH16405	Soybean	cytosol	15.45	63.43
Bra017510.1-P	Field mustard	cytosol	16.55	62.76
CDY30246	Canola	cytosol	18.0	60.74
Bra029197.1-P	Field mustard	cytosol	24.0	60.55
CDY05739	Canola	cytosol	12.36	57.14
Bra028248.1-P	Field mustard	cytosol	55.27	56.51
CDX94184	Canola	cytosol, endoplasmic reticulum	14.36	56.03
Bra037950.1-P	Field mustard	cytosol	12.18	55.83
Bra008444.1-P	Field mustard	cytosol	15.27	54.55
CDY67326	Canola	cytosol	14.73	54.36
AT5G10880.1	Thale cress	cytosol	30.36	54.05
Bra037949.1-P	Field mustard	mitochondrion	14.36	53.74
CDY33873	Canola	cytosol	11.64	52.89
CDX74456	Canola	cytosol	31.64	51.79
CDY30241	Canola	cytosol	31.64	50.29
GSMUA_Achr5P23600_001	Banana	cytosol	35.82	43.97
KRH33484	Soybean	plastid	26.91	39.05
GSMUA_Achr7P07770_001	Banana	cytosol	0.91	31.25
GSMUA_Achr7P07780_001	Banana	cytosol	8.0	29.93

Protein Annotations

KEGG:00970+6.1.1.15	MapMan:17.2.17	Gene3D:3.30.110.30	Gene3D:3.30.930.10	Gene3D:3.40.50.800	InterPro:Anticodon-bd
InterPro:Anticodon-bd_dom_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004827
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006433	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr4G09390_001	EnsemblPlants:GSMUA_Achr4P09390_001	EnsemblPlants:GSMUA_Achr4T09390_001
InterPro:IPR006195	InterPro:IPR017449	InterPro:IPR036621	UniProt:M0SMF6	HAMAP:MF_01571	PFAM:PF00587
PFAM:PF03129	PFAM:PF09180	PRINTS:PR01046	PFscan:PS50862	PANTHER:PTHR43382	PANTHER:PTHR43382:SF2
InterPro:Pro-tRNA-ligase_IIa	InterPro:Pro-tRNA-ligase_IIa_arc-type	InterPro:Pro-tRNA_ligase_II_C	InterPro:Pro-tRNA_synth_II	InterPro:ProRS_core_arch_euk	SMART:SM00946
SUPFAM:SSF52954	SUPFAM:SSF55681	SUPFAM:SSF64586	TIGRFAMs:TIGR00408	UniParc:UPI000296BE8E	InterPro:aa-tRNA-synt_IIb
InterPro:aa-tRNA-synth_II	:	:	:	:	:

Description

Putative prolyl-tRNA synthetase C19C7.06 [Source:GMGC_GENE;Acc:GSMUA_Achr4G09390_001]

Coordinates

chr4:+:6821680..6831069

Molecular Weight (calculated)

62308.8 Da

IEP (calculated)

8.563

GRAVY (calculated)

-0.316

Length

550 amino acids

Sequence
(BLAST)

001: MSPAHLLLAG EVERFGKALL SALFPARSGP LRSGVTKSSS YLSRFMATAN ANAKGARKKE VKKETGLGLT YKKNENFGEW YSEVVVNSEM IEYYDISGCY
101: ILRPWTMTIW EVLQTFFDAE IKKMNIKNAY FPLFVTESVL QREKDHIEGF APEVAWVTKS GQSELEVPIA IRPTSETVMY PYFSKWIRGH RDLPLKLNQW
201: CNVVRWEFSH PTPFIRSREF LWQEGHTAFA TQAEADQEVL EILELYRKIY EEFLAIPVVK GRKSELEKFA GGYYTTSVEA FIPNTGRGIQ GATSHCLGQN
301: FAKMFQINFE NDKGVKAMVW QNSWAYSTRT IGVMVMVHGD DKGLVLPPKV ASVQVIVIPV PFKDANTDAI FSACSSTVQA LREAGFRAEA DLRDNYSPGW
401: KYSHWEMKGV PLRIEIGPKD LANNQVRVVR RDNGAKSDIP MGNLVEKVKE ILSSIQECLF NAAKQKRDAC IKIVNTWDEF IAALNDKKMI LAPWCDEEEV
501: EKDVKARTKG ELGAAKSLCT PFDQPRLPEG TLCFASGKPA KKWTYWGRSY

Best Arabidopsis Sequence Match ( AT3G62120.3 )
(BLAST)

001: MADPSEQKEK VVKEKVAKAS SSGQKKKDVK KETGLGLSVK KDENFGEWYS EVCKQDMIEY YDISGCYILR PWSMAIWEIM QIFFDAEIKK MKVKNCYFPL
101: FVSPGVLEKE KDHIEGFAPE VAWVTKSGKS DLEVPIAIRP TSETVMYPYY SKWIRGHRDL PLKLNQWCNV VRWEFSNPTP FIRSREFLWQ EGHTAFATKA
201: EADEEVLQIL ELYRRIYEEY LAVPVVKGMK SENEKFAGGL YTTSVEAFIP NTGRGVQGAT SHCLGQNFAK MFEINFENEK AETEMVWQNS WAYSTRTIGV
301: MIMTHGDDKG LVLPPKVASV QVVVIPVPYK DANTQGIYDA CTATASALCE AGIRAEEDLR DNYSPGWKYS DWEMKGVPLR IEIGPRDLEN DQVRTVRRDN
401: GVKEDIPRGS LVEHVKELLE KIQQNMYEVA KQKREACVQE VKTWDEFIKA LNEKKLILAP WCDEEEVERD VKARTKGETG AAKTLCSPFD QPELPEGTLC
501: FASGKPAKKW TYWGRSY

Arabidopsis Description

Proline--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.