Factsheet for Bra007663.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000267.1-P
Bra004709.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62120.1	Bra000267.1-P	AT2G42580.1	19000166
AT3G62120.1	Bra004709.1-P	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76618	Canola	cytosol	96.49	96.12
Bra003487.1-P	Field mustard	cytosol	90.25	92.6
AT3G62120.1	Thale cress	cytosol	92.59	89.62
CDY11404	Canola	cytosol, mitochondrion, plastid, vacuole	97.27	89.27
PGSC0003DMT400073336	Potato	cytosol	83.24	82.91
GSMUA_Achr3P28360_001	Banana	cytosol	18.91	82.91
KRG96602	Soybean	cytosol	83.04	82.72
Solyc06g068320.2.1	Tomato	cytosol, extracellular, nucleus	83.04	82.72
PGSC0003DMT400036645	Potato	cytosol	81.09	82.7
KRH68339	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	82.85	82.52
Solyc03g117330.2.1	Tomato	cytosol	80.51	81.94
VIT_07s0005g02620.t01	Wine grape	cytosol	80.7	80.23
TraesCS3D01G415200.1	Wheat	cytosol, golgi	77.97	79.21
TraesCS1B01G342200.1	Wheat	cytosol, golgi	77.78	79.01
TraesCS3A01G419600.1	Wheat	cytosol	77.58	78.81
TraesCS3B01G455000.1	Wheat	cytosol, extracellular, golgi	77.58	78.81
EES15248	Sorghum	cytosol	77.78	78.54
Zm00001d053196_P001	Maize	cytosol	77.39	78.15
EES19704	Sorghum	cytosol	77.0	77.76
HORVU3Hr1G093050.2	Barley	cytosol	77.58	77.58
Os12t0443700-01	Rice	cytosol	77.0	77.45
Bra003486.1-P	Field mustard	cytosol	69.59	77.44
TraesCS1D01G210600.3	Wheat	cytosol	77.19	77.19
GSMUA_Achr4P09390_001	Banana	cytosol	79.53	74.18
Zm00001d002585_P004	Maize	cytosol	72.71	71.32
TraesCS7D01G203800.1	Wheat	cytosol	67.64	70.67
TraesCS7A01G200500.1	Wheat	cytosol	67.45	70.47
TraesCS7B01G107300.1	Wheat	cytosol	67.64	70.39
KRH16405	Soybean	cytosol	18.13	69.4
HORVU7Hr1G041110.1	Barley	cytosol	66.67	68.54
Bra017510.1-P	Field mustard	cytosol	18.91	66.9
Bra029197.1-P	Field mustard	cytosol	27.1	63.76
HORVU4Hr1G079480.1	Barley	cytosol	4.29	62.86
Bra028248.1-P	Field mustard	cytosol	62.96	60.04
Bra008444.1-P	Field mustard	cytosol	17.54	58.44
Bra037949.1-P	Field mustard	mitochondrion	16.37	57.14
Bra037950.1-P	Field mustard	cytosol	13.26	56.67
KRH33484	Soybean	plastid	28.85	39.05
Bra022597.1-P	Field mustard	plastid	39.38	37.27
Bra028313.1-P	Field mustard	cytosol	29.63	37.25

Protein Annotations

KEGG:00970+6.1.1.15	MapMan:17.2.17	Gene3D:3.30.110.30	Gene3D:3.30.930.10	Gene3D:3.40.50.800	InterPro:Anticodon-bd
InterPro:Anticodon-bd_dom_sf	EnsemblPlantsGene:Bra007663	EnsemblPlants:Bra007663.1	EnsemblPlants:Bra007663.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004812	GO:GO:0004827	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418
GO:GO:0006433	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:IPR006195	InterPro:IPR017449	InterPro:IPR036621	UniProt:M4CTW9	HAMAP:MF_01571	PFAM:PF00587
PFAM:PF03129	PFAM:PF09180	PRINTS:PR01046	PFscan:PS50862	PANTHER:PTHR43382	PANTHER:PTHR43382:SF2
InterPro:Pro-tRNA-ligase_IIa	InterPro:Pro-tRNA-ligase_IIa_arc-type	InterPro:Pro-tRNA_ligase_II_C	InterPro:Pro-tRNA_synth_II	InterPro:ProRS_core_arch_euk	SMART:SM00946
SUPFAM:SSF52954	SUPFAM:SSF55681	SUPFAM:SSF64586	TIGRFAMs:TIGR00408	UniParc:UPI0002542AB7	InterPro:aa-tRNA-synt_IIb
InterPro:aa-tRNA-synth_II	SEG:seg	:	:	:	:

Description

AT3G62120 (E=3e-272) | tRNA synthetase class II (G, H, P and S) family protein

Coordinates

chrA09:-:30314041..30316442

Molecular Weight (calculated)

58533.0 Da

IEP (calculated)

6.432

GRAVY (calculated)

-0.513

Length

513 amino acids

Sequence
(BLAST)

001: MAGPSGKKEK VDKAGPSGGK KKKDVKKETG LGLSVKKDEN FGEWYSEVCK HEMIEYYDIS GCYILRPWSM AIWEIMQTFF DAEIKKMKVK NCYFPLFVSP
101: GVLEKEKDHI EGFAPEVAWV TKSGKSDLEV PIAIRPTSET VMYPYYSKWI RGHRDLPLKL NQWCNVVRWE FSNPTPFIRS REFLWQEGHT AFATKEEADK
201: EVLEILELYR RIYEEYLAVP VVKGMKSENE KFAGGLYTTS VEAFIPNTGR GVQGATSHCL GQNFAKMFEI NFENEKGETE MVWQNSWAYS TRTIGVMIMT
301: HGDDKGLILP PKVASVQVVV IPVPYKDANT QGIFDACTAT VAALSEAGIR AEEDLRDNYS PGWKYSNWEM KGVPLRIEIG PRDLENNQVR TVRRDNGVKE
401: DIPRGSLVEH VKELLEKIQA NMYEVAKQKR EACVEEIKTW DEFIVALNKK KLILAPWCDE EEVERDVKAR TKGETGAAKT LCSPFEQPEL PEGTLCFASG
501: KPAKKWTYWG RSY

Best Arabidopsis Sequence Match ( AT3G62120.3 )
(BLAST)

001: MADPSEQKEK VVKEKVAKAS SSGQKKKDVK KETGLGLSVK KDENFGEWYS EVCKQDMIEY YDISGCYILR PWSMAIWEIM QIFFDAEIKK MKVKNCYFPL
101: FVSPGVLEKE KDHIEGFAPE VAWVTKSGKS DLEVPIAIRP TSETVMYPYY SKWIRGHRDL PLKLNQWCNV VRWEFSNPTP FIRSREFLWQ EGHTAFATKA
201: EADEEVLQIL ELYRRIYEEY LAVPVVKGMK SENEKFAGGL YTTSVEAFIP NTGRGVQGAT SHCLGQNFAK MFEINFENEK AETEMVWQNS WAYSTRTIGV
301: MIMTHGDDKG LVLPPKVASV QVVVIPVPYK DANTQGIYDA CTATASALCE AGIRAEEDLR DNYSPGWKYS DWEMKGVPLR IEIGPRDLEN DQVRTVRRDN
401: GVKEDIPRGS LVEHVKELLE KIQQNMYEVA KQKREACVQE VKTWDEFIKA LNEKKLILAP WCDEEEVERD VKARTKGETG AAKTLCSPFD QPELPEGTLC
501: FASGKPAKKW TYWGRSY

Arabidopsis Description

Proline--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.