Factsheet for Zm00001d053196_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004494_P001
Zm00001d006366_P001
Zm00001d008930_P003
Zm00001d009724_P009
Zm00001d011352_P001
Zm00001d033961_P001
Zm00001d039362_P002
Zm00001d044479_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62120.1	Zm00001d004494_P001	AT2G42580.1	19000166
AT3G62120.1	Zm00001d006366_P001	AT2G42580.1	19000166
AT3G62120.1	Zm00001d008930_P003	AT2G42580.1	19000166
AT3G62120.1	Zm00001d009724_P009	AT2G42580.1	19000166
AT3G62120.1	Zm00001d011352_P001	AT2G42580.1	19000166
AT3G62120.1	Zm00001d033961_P001	AT2G42580.1	19000166
AT3G62120.1	Zm00001d039362_P002	AT2G42580.1	19000166
AT3G62120.1	Zm00001d044479_P001	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19704	Sorghum	cytosol	96.65	96.65
TraesCS1B01G342200.1	Wheat	cytosol, golgi	90.16	90.69
TraesCS3A01G419600.1	Wheat	cytosol	89.37	89.9
Os12t0443700-01	Rice	cytosol	90.16	89.8
TraesCS3D01G415200.1	Wheat	cytosol, golgi	89.17	89.7
TraesCS3B01G455000.1	Wheat	cytosol, extracellular, golgi	89.17	89.7
HORVU3Hr1G093050.2	Barley	cytosol	90.16	89.28
TraesCS1D01G210600.3	Wheat	cytosol	89.76	88.89
Zm00001d002585_P004	Maize	cytosol	89.96	87.38
TraesCS7A01G200500.1	Wheat	cytosol	79.53	82.28
TraesCS7B01G107300.1	Wheat	cytosol	79.72	82.15
TraesCS7D01G203800.1	Wheat	cytosol	79.13	81.87
PGSC0003DMT400073336	Potato	cytosol	82.48	81.36
Solyc06g068320.2.1	Tomato	cytosol, extracellular, nucleus	81.89	80.78
HORVU7Hr1G041110.1	Barley	cytosol	78.74	80.16
PGSC0003DMT400036645	Potato	cytosol	78.74	79.52
Solyc03g117330.2.1	Tomato	cytosol	77.56	78.17
KRH68339	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	79.13	78.06
KRG96602	Soybean	cytosol	78.94	77.86
GSMUA_Achr3P28360_001	Banana	cytosol	17.91	77.78
VIT_07s0005g02620.t01	Wine grape	cytosol	78.74	77.52
Bra007663.1-P	Field mustard	cytosol	78.15	77.39
CDX76618	Canola	cytosol	78.35	77.28
Bra003487.1-P	Field mustard	cytosol	74.8	76.0
AT3G62120.1	Thale cress	cytosol	77.95	74.72
GSMUA_Achr4P09390_001	Banana	cytosol	79.72	73.64
CDY25092	Canola	cytosol	78.15	73.52
CDX67878	Canola	cytosol	77.95	73.06
Bra003486.1-P	Field mustard	cytosol	65.16	71.8
CDY11404	Canola	cytosol, mitochondrion, plastid, vacuole	78.35	71.2
CDX67877	Canola	cytosol	57.68	67.05
CDY25091	Canola	cytosol	55.51	64.53
CDY30246	Canola	cytosol	20.67	64.42
CDY05739	Canola	cytosol	14.76	63.03
CDY30248	Canola	cytosol	17.91	62.76
Bra017510.1-P	Field mustard	cytosol	17.72	62.07
KRH16405	Soybean	cytosol	16.34	61.94
Bra029197.1-P	Field mustard	cytosol	25.39	59.17
CDX94184	Canola	cytosol, endoplasmic reticulum	16.14	58.16
CDY33873	Canola	cytosol	13.78	57.85
Bra028248.1-P	Field mustard	cytosol	60.83	57.43
Bra008444.1-P	Field mustard	cytosol	16.93	55.84
Bra037949.1-P	Field mustard	mitochondrion	16.14	55.78
CDY67326	Canola	cytosol	16.34	55.7
Bra037950.1-P	Field mustard	cytosol	12.8	54.17
AT5G10880.1	Thale cress	cytosol	32.48	53.4
CDX74456	Canola	cytosol	34.84	52.68
CDY30241	Canola	cytosol	35.24	51.73
Zm00001d018870_P001	Maize	plastid	41.93	39.66
KRH33484	Soybean	plastid	27.17	36.41

Protein Annotations

KEGG:00970+6.1.1.15	EntrezGene:100272402	MapMan:17.2.17	Gene3D:3.30.110.30	Gene3D:3.30.930.10	Gene3D:3.40.50.800
ProteinID:AQK58914.1	InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004812	GO:GO:0004827	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006433
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016874	GO:GO:0019538
InterPro:IPR006195	InterPro:IPR017449	InterPro:IPR036621	UniProt:K7UDG5	HAMAP:MF_01571	PFAM:PF00587
PFAM:PF03129	PFAM:PF09180	PRINTS:PR01046	PFscan:PS50862	PANTHER:PTHR43382	PANTHER:PTHR43382:SF2
InterPro:Pro-tRNA-ligase_IIa	InterPro:Pro-tRNA-ligase_IIa_arc-type	InterPro:Pro-tRNA_ligase_II_C	InterPro:Pro-tRNA_synth_II	InterPro:ProRS_core_arch_euk	SMART:SM00946
SUPFAM:SSF52954	SUPFAM:SSF55681	SUPFAM:SSF64586	TIGRFAMs:TIGR00408	UniParc:UPI000220D3C7	EnsemblPlantsGene:Zm00001d053196
EnsemblPlants:Zm00001d053196_P001	EnsemblPlants:Zm00001d053196_T001	InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	SEG:seg	:

Description

Proline--tRNA ligase cytoplasmic

Coordinates

chr4:+:219324704..219347025

Molecular Weight (calculated)

58136.5 Da

IEP (calculated)

7.118

GRAVY (calculated)

-0.481

Length

508 amino acids

Sequence
(BLAST)

001: MSTNKGSAAK GGGGKKKEVK KETKLGMAYK KDDNFGEWYS EVVVNSEMIE YYDISGCYIL RPWAMEIWEL LKEFFDAEIK KLKLKPYYFP LFVTENVLQK
101: EKDHIEGFAP EVAWVTKSGK SDLEAPIAIR PTSETVMYPY FSKWIRSHRD LPLRCNQWCN VVRWEFSNPT PFIRSREFLW QEGHTAFATK EEADEEVLQI
201: LELYRRIYEE FLAVPVSKGR KSEMEKFAGG LYTTSVEAFI PNTGRGIQGA TSHCLGQNFA KMFDITFENE KGVREMVWQN SWAYTTRSIG VMVMTHGDDK
301: GLVLPPKVAP IQVIVIPVPY KDADTTAIKG ACESTVYTLD QSGIRADQDT RENYSPGWKY SHWEMKGVPL RIEIGPKDLA NKQVRVVRRD NGAKVDIPVT
401: NLVEEVKVLL DEIQKNLFKT AQEKRDACVH VVNTWDEFTT ALNNKKLILA PWCDEEEIEK NVKTRTKGEL GAAKTLCTPF EQPELPEGTL CFASGKPAKK
501: WSFWGRSY

Best Arabidopsis Sequence Match ( AT3G62120.2 )
(BLAST)

001: MADPSEQKEK VVKEKKEKVK KEKVVKEKVA KASSSGQKKK DVKKETGLGL SVKKDENFGE WYSEVCKQDM IEYYDISGCY ILRPWSMAIW EIMQIFFDAE
101: IKKMKVKNCY FPLFVSPGVL EKEKDHIEGF APEVAWVTKS GKSDLEVPIA IRPTSETVMY PYYSKWIRGH RDLPLKLNQW CNVVRWEFSN PTPFIRSREF
201: LWQEGHTAFA TKAEADEEVL QILELYRRIY EEYLAVPVVK GMKSENEKFA GGLYTTSVEA FIPNTGRGVQ GATSHCLGQN FAKMFEINFE NEKAETEMVW
301: QNSWAYSTRT IGVMIMTHGD DKGLVLPPKV ASVQVVVIPV PYKDANTQGI YDACTATASA LCEAGIRAEE DLRDNYSPGW KYSDWEMKGV PLRIEIGPRD
401: LENDQVRTVR RDNGVKEDIP RGSLVEHVKE LLEKIQQNMY EVAKQKREAC VQEVKTWDEF IKALNEKKLI LAPWCDEEEV ERDVKARTKG ETGAAKTLCS
501: PFDQPELPEG TLCFASGKPA KKWTYWGRSY

Arabidopsis Description

Proline--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.