Factsheet for PGSC0003DMT400036645

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g117330.2.1	Tomato	cytosol	95.43	95.24
PGSC0003DMT400073336	Potato	cytosol	91.45	89.32
KRG96602	Soybean	cytosol	84.29	82.33
KRH68339	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	84.1	82.14
GSMUA_Achr3P28360_001	Banana	cytosol	18.89	81.2
Bra007663.1-P	Field mustard	cytosol	82.7	81.09
CDX76618	Canola	cytosol	82.7	80.78
VIT_07s0005g02620.t01	Wine grape	cytosol	82.31	80.23
EES15248	Sorghum	cytosol	79.52	78.74
Zm00001d053196_P001	Maize	cytosol	79.52	78.74
Bra003487.1-P	Field mustard	cytosol	78.13	78.6
AT3G62120.1	Thale cress	cytosol	82.5	78.3
EES19704	Sorghum	cytosol	78.93	78.15
TraesCS3D01G415200.1	Wheat	cytosol, golgi	77.73	77.43
TraesCS3B01G455000.1	Wheat	cytosol, extracellular, golgi	77.73	77.43
TraesCS1B01G342200.1	Wheat	cytosol, golgi	77.73	77.43
TraesCS3A01G419600.1	Wheat	cytosol	77.53	77.23
Os12t0443700-01	Rice	cytosol	78.13	77.06
TraesCS1D01G210600.3	Wheat	cytosol	77.93	76.41
CDY25092	Canola	cytosol	81.91	76.3
HORVU3Hr1G093050.2	Barley	cytosol	77.73	76.22
CDX67878	Canola	cytosol	81.71	75.83
GSMUA_Achr4P09390_001	Banana	cytosol	81.31	74.36
CDY11404	Canola	cytosol, mitochondrion, plastid, vacuole	82.5	74.24
Zm00001d002585_P004	Maize	cytosol	75.15	72.28
TraesCS7A01G200500.1	Wheat	cytosol	70.38	72.1
Bra003486.1-P	Field mustard	cytosol	66.0	72.02
TraesCS7B01G107300.1	Wheat	cytosol	70.18	71.6
TraesCS7D01G203800.1	Wheat	cytosol	69.78	71.49
HORVU4Hr1G079480.1	Barley	cytosol	4.97	71.43
HORVU7Hr1G041110.1	Barley	cytosol	68.79	69.34
KRH16405	Soybean	cytosol	18.29	68.66
CDX67877	Canola	cytosol	58.65	67.51
CDY30248	Canola	cytosol	19.09	66.21
CDY25091	Canola	cytosol	56.06	64.53
Bra017510.1-P	Field mustard	cytosol	18.09	62.76
CDY30246	Canola	cytosol	20.28	62.58
Bra029197.1-P	Field mustard	cytosol	25.84	59.63
CDY05739	Canola	cytosol	13.72	57.98
Bra028248.1-P	Field mustard	cytosol	61.23	57.25
AT5G10880.1	Thale cress	cytosol	34.59	56.31
CDX94184	Canola	cytosol, endoplasmic reticulum	15.71	56.03
CDY33873	Canola	cytosol	13.32	55.37
Bra008444.1-P	Field mustard	cytosol	16.3	53.25
CDY67326	Canola	cytosol	15.71	53.02
CDX74456	Canola	cytosol	34.99	52.38
Bra037949.1-P	Field mustard	mitochondrion	15.11	51.7
Bra037950.1-P	Field mustard	cytosol	12.33	51.67
CDY30241	Canola	cytosol	34.99	50.87
KRH33484	Soybean	plastid	29.22	38.79
PGSC0003DMT400070798	Potato	plastid	39.16	36.01

Protein Annotations

KEGG:00970+6.1.1.15	EntrezGene:102578711	MapMan:17.2.17	Gene3D:3.30.110.30	Gene3D:3.30.930.10	Gene3D:3.40.50.800
InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812
GO:GO:0004827	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006433	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR006195	InterPro:IPR017449
InterPro:IPR036621	UniProt:M1B3Z4	HAMAP:MF_01571	PFAM:PF00587	PFAM:PF03129	PFAM:PF09180
EnsemblPlantsGene:PGSC0003DMG400014136	PGSC:PGSC0003DMG400014136	EnsemblPlants:PGSC0003DMT400036645	PRINTS:PR01046	PFscan:PS50862	PANTHER:PTHR43382
PANTHER:PTHR43382:SF2	InterPro:Pro-tRNA-ligase_IIa	InterPro:Pro-tRNA-ligase_IIa_arc-type	InterPro:Pro-tRNA_ligase_II_C	InterPro:Pro-tRNA_synth_II	InterPro:ProRS_core_arch_euk
SMART:SM00946	SUPFAM:SSF52954	SUPFAM:SSF55681	SUPFAM:SSF64586	TIGRFAMs:TIGR00408	UniParc:UPI000294BF28
RefSeq:XP_006341385.1	RefSeq:XP_006341386.1	InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	SEG:seg	:

Description

Prolyl-tRNA synthetase [Source:PGSC_GENE;Acc:PGSC0003DMG400014136]

Coordinates

chr3:+:57071533..57079260

Molecular Weight (calculated)

57292.4 Da

IEP (calculated)

6.637

GRAVY (calculated)

-0.433

Length

503 amino acids

Sequence
(BLAST)

001: MSGKDPKKGK MKEVKKETGL GLSYKKDENF GEWYSEVVVS GEMIEYYDIS GCYILRPWSM SIWEILHGFF DAEIKKMKIK NSYFPLFVSP AVLQKEKDHI
101: EGFAPEVAWV TKSGDSDLEV PIAIRPTSET VMYPYFSKWI RGHRDLPLRL NQWCNVVRWE FSNPTPFIRS REFLWQEGHT AFATKEESDA EVLEILELYR
201: RIYEELLAVP VSKGKKSELE KFAGGLYTTT VEAFIPNTGR GIQGATSHCL GQNFARIFEI NFENEKGEKA MVWQNSWGFS TRTIGVMIMV HGDDKGLVLP
301: PKVASTQVVV IPVPYKDANT QGIYDACAAT VREMNESGIR AEADFRDNYS PGWKYSHWEM KGVPLRIEIG PKDFANNQVR AVRRDNGAKT DIPMANLAEQ
401: VKDLLATIQQ NLFDVAKQKR DACVQIVRTW DEFTVALGQK KLVLAPWCDE EDVEKDVKAR TKGEMGSVKT LCSPFDQPEL PEGTLCFASG KPAKKWTYWG
501: RSY

Best Arabidopsis Sequence Match ( AT3G62120.2 )
(BLAST)

001: MADPSEQKEK VVKEKKEKVK KEKVVKEKVA KASSSGQKKK DVKKETGLGL SVKKDENFGE WYSEVCKQDM IEYYDISGCY ILRPWSMAIW EIMQIFFDAE
101: IKKMKVKNCY FPLFVSPGVL EKEKDHIEGF APEVAWVTKS GKSDLEVPIA IRPTSETVMY PYYSKWIRGH RDLPLKLNQW CNVVRWEFSN PTPFIRSREF
201: LWQEGHTAFA TKAEADEEVL QILELYRRIY EEYLAVPVVK GMKSENEKFA GGLYTTSVEA FIPNTGRGVQ GATSHCLGQN FAKMFEINFE NEKAETEMVW
301: QNSWAYSTRT IGVMIMTHGD DKGLVLPPKV ASVQVVVIPV PYKDANTQGI YDACTATASA LCEAGIRAEE DLRDNYSPGW KYSDWEMKGV PLRIEIGPRD
401: LENDQVRTVR RDNGVKEDIP RGSLVEHVKE LLEKIQQNMY EVAKQKREAC VQEVKTWDEF IKALNEKKLI LAPWCDEEEV ERDVKARTKG ETGAAKTLCS
501: PFDQPELPEG TLCFASGKPA KKWTYWGRSY

Arabidopsis Description

Proline--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.