Factsheet for PGSC0003DMT400070798

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g096870.2.1	Tomato	plastid	98.72	98.72
VIT_16s0050g00960.t01	Wine grape	cytosol	72.03	87.95
GSMUA_Achr7P07770_001	Banana	cytosol	2.56	87.5
GSMUA_Achr5P23600_001	Banana	cytosol	70.38	85.94
Os07t0165000-01	Rice	cytosol, mitochondrion, plastid	56.86	82.49
KRH08879	Soybean	plastid	78.79	78.94
KRH38393	Soybean	plastid	78.79	78.94
AT5G52520.1	Thale cress	plastid	76.23	76.8
CDY27824	Canola	mitochondrion, plastid	74.77	76.45
EER95900	Sorghum	mitochondrion	74.04	76.42
Bra022597.1-P	Field mustard	plastid	75.14	75.83
CDY27062	Canola	plastid	75.14	75.83
CDX91656	Canola	plastid	70.2	75.74
Zm00001d018870_P001	Maize	plastid	73.86	75.23
TraesCS2A01G246200.1	Wheat	mitochondrion	74.22	75.05
TraesCS2D01G248600.1	Wheat	mitochondrion	74.04	74.86
TraesCS2B01G270500.1	Wheat	mitochondrion	73.67	74.49
HORVU2Hr1G057880.3	Barley	mitochondrion	73.49	74.31
Bra028313.1-P	Field mustard	cytosol	51.37	68.87
CDY00534	Canola	cytosol	48.08	66.58
GSMUA_Achr7P07780_001	Banana	cytosol	15.54	57.82
PGSC0003DMT400073336	Potato	cytosol	37.66	40.0
PGSC0003DMT400036645	Potato	cytosol	36.01	39.16

Protein Annotations

KEGG:00970+6.1.1.15	EntrezGene:102597850	MapMan:17.2.17	Gene3D:3.30.110.30	Gene3D:3.30.930.10	Gene3D:3.40.50.800
InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004812	GO:GO:0004827	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418
GO:GO:0006433	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009553	GO:GO:0009570	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987
GO:GO:0010109	GO:GO:0015979	GO:GO:0019538	GO:GO:0048316	GO:GO:0048481	InterPro:IPR006195
InterPro:IPR017449	InterPro:IPR036621	UniProt:M1CMQ3	HAMAP:MF_01571	PFAM:PF00587	PFAM:PF03129
PFAM:PF09180	EnsemblPlantsGene:PGSC0003DMG400027526	PGSC:PGSC0003DMG400027526	EnsemblPlants:PGSC0003DMT400070798	PRINTS:PR01046	PFscan:PS50862
PANTHER:PTHR43382	PANTHER:PTHR43382:SF3	InterPro:Pro-tRNA-ligase_IIa	InterPro:Pro-tRNA-ligase_IIa_arc-type	InterPro:Pro-tRNA_ligase_II_C	InterPro:Pro-tRNA_synth_II
InterPro:ProRS_core_arch_euk	SMART:SM00946	SUPFAM:SSF52954	SUPFAM:SSF55681	SUPFAM:SSF64586	TIGRFAMs:TIGR00408
UniParc:UPI0002962472	RefSeq:XP_006347703.1	InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	SEG:seg	:

Description

Prolyl-tRNA synthetase [Source:PGSC_GENE;Acc:PGSC0003DMG400027526]

Coordinates

chr1:+:74622298..74628361

Molecular Weight (calculated)

61155.9 Da

IEP (calculated)

6.872

GRAVY (calculated)

-0.350

Length

547 amino acids

Sequence
(BLAST)

001: MGALRLPALT SIFTSSSSVR SSPAIFPLKH RLRLPLRRPF SAQSTTEKVV APELGDGKGK VVDKDKDRVI TPRSQDFNAW YLDVIANAEL ADYGPVRGTM
101: VIRPYGYAIW EAIQEYMNVK FKETGHSNMY FPQFIPYSFI EKEASHVEGF SPELALVTVG GGKELEEKLV VRPTSETIVN HMFTQWIHSY RDLPLMINQW
201: ANVTRWEMRT KPFIRTLEFL WQEGHTAHAT AEEAEEEAMQ MIDVYTKFAY EQAAIPVIAG RKSRVETFAG ASTTYTIEAM MGDRKALQAG TSHNLGQNFS
301: RAFGTQFTDE NGQRQHVWQT SWAISTRFVG GIIMTHGDDA GLLLPPRLAP VQVVIVPIWK KDNEKAGVLT ASSSVKETLQ AAGIKVKIDD SDQRTPGWKF
401: NYYEMKGVPL RIEIGPRDVS SGTLVISRRD IPGKQGKVFG ISMEPSALVA YVKDKLNEVQ SSLLERATTF RDSNIVDVSS YDELKEAIAQ GKWARGPWSA
501: GDEEESKVKE ETGATIRCFP FEQPEGPKKC LMTGNSADEV AIFAKSY

Best Arabidopsis Sequence Match ( AT5G52520.1 )
(BLAST)

001: MVSSSLRLPS LTSLLFPATT RYPATLRRTV CLRNRPLSGF ATAPSGTASP ETKSSEVDRL RSDRAVTPRS QDFNAWYLDV IASAELADYG PVRGTMVIRP
101: YGYAIWEAIQ DYLNVKFKET GHSNMYFPQF IPYSFIEKEA SHVEGFSPEL ALVTVGGGKE LEEKLVVRPT SETIVNHMFT QWIHSYRDLP LMINQWANVT
201: RWEMRTKPFI RTLEFLWQEG HTAHATPEEA EKEAKQMIEI YTRFAFEQTA IPVIPGRKSK LETFAGADIT YTIEAMMGDR KALQAGTSHN LGQNFSRAFG
301: TQFADENGER QHVWQTSWAV STRFVGGIIM THGDDTGLML PPKIAPIQVV IVPIWKKDTE KTGVLSAASS VKEALQTAGV RVKLDDTDQR TPGWKFNFWE
401: MKGIPLRIEI GPRDVSSNSV VVSRRDVPGK AGKVFGISME PSTLVAYVKE KLDEIQTSLL EKALSFRDSN IVDVNSYAEL KDAISSGKWA RGPWSASDAD
501: EQRVKEETGA TIRCFPFEQT QGTKTCLMTG NPAEEVAIFA KSY

Arabidopsis Description

OVA6Proline--tRNA ligase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.